miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11470 5' -63.4 NC_003085.1 + 20714 1.06 0.000272
Target:  5'- aGUCCACCCGUCCCGCACCCGGUGCGUc -3'
miRNA:   3'- -CAGGUGGGCAGGGCGUGGGCCACGCA- -5'
11470 5' -63.4 NC_003085.1 + 683 0.74 0.078359
Target:  5'- -gCCACCUGUCCCGCGUCCGGccucggGCGc -3'
miRNA:   3'- caGGUGGGCAGGGCGUGGGCCa-----CGCa -5'
11470 5' -63.4 NC_003085.1 + 43994 0.74 0.085049
Target:  5'- uGUCCGCCUccaacUCCCGCACUCGGgccucgGCGg -3'
miRNA:   3'- -CAGGUGGGc----AGGGCGUGGGCCa-----CGCa -5'
11470 5' -63.4 NC_003085.1 + 1483 0.72 0.114521
Target:  5'- -gCCGCCCGUCaCCGuCGCcagccucggCCGGUGCGc -3'
miRNA:   3'- caGGUGGGCAG-GGC-GUG---------GGCCACGCa -5'
11470 5' -63.4 NC_003085.1 + 17803 0.72 0.11763
Target:  5'- aUCCACCg--CCCGC-CCCGGUGCc- -3'
miRNA:   3'- cAGGUGGgcaGGGCGuGGGCCACGca -5'
11470 5' -63.4 NC_003085.1 + 8756 0.71 0.130868
Target:  5'- gGUCCACCggcgCGUCCaGCACCCGGacgucgucccccUGCGc -3'
miRNA:   3'- -CAGGUGG----GCAGGgCGUGGGCC------------ACGCa -5'
11470 5' -63.4 NC_003085.1 + 48502 0.71 0.141312
Target:  5'- uGUCCugccccggcagcgGCCUGUCUgGCACCCGGacGCGg -3'
miRNA:   3'- -CAGG-------------UGGGCAGGgCGUGGGCCa-CGCa -5'
11470 5' -63.4 NC_003085.1 + 22584 0.71 0.141685
Target:  5'- aGUCCACCCa-CCgGCGCCggcaGGUGCGc -3'
miRNA:   3'- -CAGGUGGGcaGGgCGUGGg---CCACGCa -5'
11470 5' -63.4 NC_003085.1 + 10789 0.7 0.149346
Target:  5'- -gCCACCUcUUCCGCGCagCGGUGCGa -3'
miRNA:   3'- caGGUGGGcAGGGCGUGg-GCCACGCa -5'
11470 5' -63.4 NC_003085.1 + 1502 0.7 0.153315
Target:  5'- -gCgGCCCGUCCgGCGCUCGG-GCa- -3'
miRNA:   3'- caGgUGGGCAGGgCGUGGGCCaCGca -5'
11470 5' -63.4 NC_003085.1 + 21151 0.7 0.157381
Target:  5'- --aCGCCCGUCCCaccgcGCACCUGcUGCGa -3'
miRNA:   3'- cagGUGGGCAGGG-----CGUGGGCcACGCa -5'
11470 5' -63.4 NC_003085.1 + 40942 0.69 0.1792
Target:  5'- -aCCGCCUucgCCUGCGCCCgcuGGUGCGc -3'
miRNA:   3'- caGGUGGGca-GGGCGUGGG---CCACGCa -5'
11470 5' -63.4 NC_003085.1 + 27882 0.69 0.1792
Target:  5'- uGUCgGCCaugCCCGuCACCUGGUGCa- -3'
miRNA:   3'- -CAGgUGGgcaGGGC-GUGGGCCACGca -5'
11470 5' -63.4 NC_003085.1 + 5577 0.69 0.193546
Target:  5'- gGUgCGCCaCGUCUaCGC-CCUGGUGCGg -3'
miRNA:   3'- -CAgGUGG-GCAGG-GCGuGGGCCACGCa -5'
11470 5' -63.4 NC_003085.1 + 38629 0.69 0.203145
Target:  5'- cUCgCAUCCcacUCCCGCagucgcuGCCCGGUGCGc -3'
miRNA:   3'- cAG-GUGGGc--AGGGCG-------UGGGCCACGCa -5'
11470 5' -63.4 NC_003085.1 + 15280 0.68 0.208889
Target:  5'- -cUCACCCGccgcgCCCGCgucaugcugGCCCGGgGCGUc -3'
miRNA:   3'- caGGUGGGCa----GGGCG---------UGGGCCaCGCA- -5'
11470 5' -63.4 NC_003085.1 + 40417 0.68 0.208889
Target:  5'- -aCCugCCG-CCCGUgcaGCCgCGGUGUGg -3'
miRNA:   3'- caGGugGGCaGGGCG---UGG-GCCACGCa -5'
11470 5' -63.4 NC_003085.1 + 29743 0.68 0.230967
Target:  5'- -gCUGCCCGUCUCGUGCUCgaaGGUGCa- -3'
miRNA:   3'- caGGUGGGCAGGGCGUGGG---CCACGca -5'
11470 5' -63.4 NC_003085.1 + 770 0.67 0.248791
Target:  5'- aGUCCGCCaCG-CCgCGCAa-CGGUGCGc -3'
miRNA:   3'- -CAGGUGG-GCaGG-GCGUggGCCACGCa -5'
11470 5' -63.4 NC_003085.1 + 36898 0.67 0.248791
Target:  5'- gGUCCA-CCGUCCCa-GCCCGGccaGCGg -3'
miRNA:   3'- -CAGGUgGGCAGGGcgUGGGCCa--CGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.