miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11471 3' -59.6 NC_003085.1 + 95 0.66 0.470928
Target:  5'- uCUaGCAGGaCGgcGGAcgGGCGgcgggCCCCCa -3'
miRNA:   3'- cGAcCGUCC-GCaaCCU--CCGUa----GGGGG- -5'
11471 3' -59.6 NC_003085.1 + 140 0.69 0.276793
Target:  5'- --gGGCGGGaCGgagcugGGAGGUcgCCuCCCg -3'
miRNA:   3'- cgaCCGUCC-GCaa----CCUCCGuaGG-GGG- -5'
11471 3' -59.6 NC_003085.1 + 884 0.66 0.422884
Target:  5'- --cGGCGguGGCGUccGaGGGGCAUCCCgugCCa -3'
miRNA:   3'- cgaCCGU--CCGCAa-C-CUCCGUAGGG---GG- -5'
11471 3' -59.6 NC_003085.1 + 1324 0.67 0.4036
Target:  5'- gGCUGGCAcugcgauGGCGcUGGAguacggacGGCuUCCgCCu -3'
miRNA:   3'- -CGACCGU-------CCGCaACCU--------CCGuAGGgGG- -5'
11471 3' -59.6 NC_003085.1 + 1802 0.66 0.451367
Target:  5'- cGUUGGCuGGCcg-GGAcuGGUgcgCCCCCu -3'
miRNA:   3'- -CGACCGuCCGcaaCCU--CCGua-GGGGG- -5'
11471 3' -59.6 NC_003085.1 + 4423 0.67 0.377904
Target:  5'- aGgaGGCuGGCGacUGGcAGaGCAUCCCUg -3'
miRNA:   3'- -CgaCCGuCCGCa-ACC-UC-CGUAGGGGg -5'
11471 3' -59.6 NC_003085.1 + 5610 0.67 0.395507
Target:  5'- ---uGCAGGUGUUGGAGGaggagaacgCCCgCCu -3'
miRNA:   3'- cgacCGUCCGCAACCUCCgua------GGG-GG- -5'
11471 3' -59.6 NC_003085.1 + 8309 0.73 0.148011
Target:  5'- --aGGUAGcCGUUGGAGGCAUCCggCCa -3'
miRNA:   3'- cgaCCGUCcGCAACCUCCGUAGGg-GG- -5'
11471 3' -59.6 NC_003085.1 + 9060 0.67 0.369301
Target:  5'- gGC-GGCAGGUG-UGGuGGUucggCCCCa -3'
miRNA:   3'- -CGaCCGUCCGCaACCuCCGua--GGGGg -5'
11471 3' -59.6 NC_003085.1 + 12710 0.66 0.441755
Target:  5'- gGCgaGGCcGGCGgccgaggGGAGGUAgcgcauaCCCCg -3'
miRNA:   3'- -CGa-CCGuCCGCaa-----CCUCCGUag-----GGGG- -5'
11471 3' -59.6 NC_003085.1 + 16394 0.68 0.319787
Target:  5'- aGUUGGCAGGUGUcGaGGGcGCGUUgaagcgucucuggCCCCa -3'
miRNA:   3'- -CGACCGUCCGCAaC-CUC-CGUAG-------------GGGG- -5'
11471 3' -59.6 NC_003085.1 + 19154 0.71 0.209131
Target:  5'- cGCUGGguGGCcaUGGGGuCGUCCUCa -3'
miRNA:   3'- -CGACCguCCGcaACCUCcGUAGGGGg -5'
11471 3' -59.6 NC_003085.1 + 19334 0.67 0.386639
Target:  5'- uGCUGGgGccGGCGgcGGAuGGCGUCCgUg -3'
miRNA:   3'- -CGACCgU--CCGCaaCCU-CCGUAGGgGg -5'
11471 3' -59.6 NC_003085.1 + 20199 0.67 0.369301
Target:  5'- uGCUGGCcgaauucggacuGGGCGUUgcGGuAGGCcucgcugCCCUCg -3'
miRNA:   3'- -CGACCG------------UCCGCAA--CC-UCCGua-----GGGGG- -5'
11471 3' -59.6 NC_003085.1 + 20430 0.97 0.002403
Target:  5'- uGCUGGaC-GGCGUUGGAGGCAUCCCCCa -3'
miRNA:   3'- -CGACC-GuCCGCAACCUCCGUAGGGGG- -5'
11471 3' -59.6 NC_003085.1 + 20433 0.67 0.377904
Target:  5'- cGCUGGCAGGa---GGAGaUGUCCgCCg -3'
miRNA:   3'- -CGACCGUCCgcaaCCUCcGUAGGgGG- -5'
11471 3' -59.6 NC_003085.1 + 21815 0.67 0.369301
Target:  5'- cGgUGGCGaugcGGCGUcccgcUGGcGGCGagCCCCCc -3'
miRNA:   3'- -CgACCGU----CCGCA-----ACCuCCGUa-GGGGG- -5'
11471 3' -59.6 NC_003085.1 + 23662 0.66 0.4739
Target:  5'- -aUGGCAGGCcacuccuucagcGGCGUCCCCa -3'
miRNA:   3'- cgACCGUCCGcaaccu------CCGUAGGGGg -5'
11471 3' -59.6 NC_003085.1 + 29160 0.66 0.470928
Target:  5'- aGgUGGCGGGCGcgUUGGgcacggccuuGGGCuUCgCCUCa -3'
miRNA:   3'- -CgACCGUCCGC--AACC----------UCCGuAG-GGGG- -5'
11471 3' -59.6 NC_003085.1 + 32574 0.72 0.188301
Target:  5'- aGUUGGCggAGGCGa-GGGGGCuUgCCCCg -3'
miRNA:   3'- -CGACCG--UCCGCaaCCUCCGuAgGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.