Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11471 | 3' | -59.6 | NC_003085.1 | + | 16394 | 0.68 | 0.319787 |
Target: 5'- aGUUGGCAGGUGUcGaGGGcGCGUUgaagcgucucuggCCCCa -3' miRNA: 3'- -CGACCGUCCGCAaC-CUC-CGUAG-------------GGGG- -5' |
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11471 | 3' | -59.6 | NC_003085.1 | + | 38142 | 0.69 | 0.305416 |
Target: 5'- cGCccuGCuGGCGUUGGugguGGCGcUCCCCg -3' miRNA: 3'- -CGac-CGuCCGCAACCu---CCGU-AGGGGg -5' |
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11471 | 3' | -59.6 | NC_003085.1 | + | 46423 | 0.69 | 0.290829 |
Target: 5'- uCUGGCGGGCGagUGGAGuaGUggaCCUCg -3' miRNA: 3'- cGACCGUCCGCa-ACCUCcgUAg--GGGG- -5' |
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11471 | 3' | -59.6 | NC_003085.1 | + | 42743 | 0.69 | 0.283743 |
Target: 5'- gGCgauGCGGGCGcggUGGAcGGCAUCCaucgCCg -3' miRNA: 3'- -CGac-CGUCCGCa--ACCU-CCGUAGGg---GG- -5' |
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11471 | 3' | -59.6 | NC_003085.1 | + | 140 | 0.69 | 0.276793 |
Target: 5'- --gGGCGGGaCGgagcugGGAGGUcgCCuCCCg -3' miRNA: 3'- cgaCCGUCC-GCaa----CCUCCGuaGG-GGG- -5' |
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11471 | 3' | -59.6 | NC_003085.1 | + | 39683 | 0.71 | 0.21464 |
Target: 5'- aGCa-GCAGGCGcUGGAGGCucGUCUCuCCg -3' miRNA: 3'- -CGacCGUCCGCaACCUCCG--UAGGG-GG- -5' |
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11471 | 3' | -59.6 | NC_003085.1 | + | 19154 | 0.71 | 0.209131 |
Target: 5'- cGCUGGguGGCcaUGGGGuCGUCCUCa -3' miRNA: 3'- -CGACCguCCGcaACCUCcGUAGGGGg -5' |
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11471 | 3' | -59.6 | NC_003085.1 | + | 36915 | 0.71 | 0.203744 |
Target: 5'- --cGGCcagcGGCGcgGGuGGCAUCCCUCu -3' miRNA: 3'- cgaCCGu---CCGCaaCCuCCGUAGGGGG- -5' |
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11471 | 3' | -59.6 | NC_003085.1 | + | 40997 | 0.72 | 0.197958 |
Target: 5'- gGCUGGCccagcGGCGUcgucaucgccgUGGGcgucgcuGGCGUCCUCCu -3' miRNA: 3'- -CGACCGu----CCGCA-----------ACCU-------CCGUAGGGGG- -5' |
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11471 | 3' | -59.6 | NC_003085.1 | + | 32574 | 0.72 | 0.188301 |
Target: 5'- aGUUGGCggAGGCGa-GGGGGCuUgCCCCg -3' miRNA: 3'- -CGACCG--UCCGCaaCCUCCGuAgGGGG- -5' |
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11471 | 3' | -59.6 | NC_003085.1 | + | 36468 | 0.73 | 0.149622 |
Target: 5'- uGCggGGUAGGUGUUGGAGGUAgccagggcacggagcUCUgCCg -3' miRNA: 3'- -CGa-CCGUCCGCAACCUCCGU---------------AGGgGG- -5' |
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11471 | 3' | -59.6 | NC_003085.1 | + | 8309 | 0.73 | 0.148011 |
Target: 5'- --aGGUAGcCGUUGGAGGCAUCCggCCa -3' miRNA: 3'- cgaCCGUCcGCAACCUCCGUAGGg-GG- -5' |
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11471 | 3' | -59.6 | NC_003085.1 | + | 20430 | 0.97 | 0.002403 |
Target: 5'- uGCUGGaC-GGCGUUGGAGGCAUCCCCCa -3' miRNA: 3'- -CGACC-GuCCGCAACCUCCGUAGGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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