miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11472 3' -61.5 NC_003085.1 + 48284 0.66 0.373891
Target:  5'- -aCGCGCaga-GCAGCGcguggGCUCCGCCc -3'
miRNA:   3'- cgGCGCGaccgCGUCGU-----UGAGGCGGu -5'
11472 3' -61.5 NC_003085.1 + 2411 0.66 0.373891
Target:  5'- cGCCGaGCUGGUGguGacgaaGACgcgCUGCCc -3'
miRNA:   3'- -CGGCgCGACCGCguCg----UUGa--GGCGGu -5'
11472 3' -61.5 NC_003085.1 + 49300 0.66 0.373035
Target:  5'- cGUCGCGUcGGCGUcccgggaGGCGaccucccaGCUCCGUCc -3'
miRNA:   3'- -CGGCGCGaCCGCG-------UCGU--------UGAGGCGGu -5'
11472 3' -61.5 NC_003085.1 + 47975 0.66 0.365398
Target:  5'- gGCCGagGCUGGCgacggugacggGCGGCGACUUggggUGUCAu -3'
miRNA:   3'- -CGGCg-CGACCG-----------CGUCGUUGAG----GCGGU- -5'
11472 3' -61.5 NC_003085.1 + 17655 0.66 0.365398
Target:  5'- aGCCacgggagggagGCGCUGGCGCugagacCGACgacgCgGCCAg -3'
miRNA:   3'- -CGG-----------CGCGACCGCGuc----GUUGa---GgCGGU- -5'
11472 3' -61.5 NC_003085.1 + 17390 0.66 0.365398
Target:  5'- cUCGUGUUGGCG-AGCGua-CCGCCGg -3'
miRNA:   3'- cGGCGCGACCGCgUCGUugaGGCGGU- -5'
11472 3' -61.5 NC_003085.1 + 6852 0.66 0.365398
Target:  5'- uGUCGCGaaagccGCGCAGCAcuACccgUCCGCCc -3'
miRNA:   3'- -CGGCGCgac---CGCGUCGU--UG---AGGCGGu -5'
11472 3' -61.5 NC_003085.1 + 48376 0.66 0.365398
Target:  5'- -gCGCGCuccUGaGCGCGGCgAGCagCGCCGc -3'
miRNA:   3'- cgGCGCG---AC-CGCGUCG-UUGagGCGGU- -5'
11472 3' -61.5 NC_003085.1 + 44515 0.66 0.365398
Target:  5'- -gCGCGgUGGUGCccAGC-AC-CCGCCGg -3'
miRNA:   3'- cgGCGCgACCGCG--UCGuUGaGGCGGU- -5'
11472 3' -61.5 NC_003085.1 + 5372 0.66 0.365398
Target:  5'- cGUCG-GCUGGcCGCGGCGAUggacggcgaaCCGCUg -3'
miRNA:   3'- -CGGCgCGACC-GCGUCGUUGa---------GGCGGu -5'
11472 3' -61.5 NC_003085.1 + 41423 0.66 0.365398
Target:  5'- aGCUGCGUUGucgaGCGCAGUccCguaCGCCAg -3'
miRNA:   3'- -CGGCGCGAC----CGCGUCGuuGag-GCGGU- -5'
11472 3' -61.5 NC_003085.1 + 8414 0.66 0.365398
Target:  5'- aGCaucCGCUGGCaguuuCAGguGCUCgGCCAg -3'
miRNA:   3'- -CGgc-GCGACCGc----GUCguUGAGgCGGU- -5'
11472 3' -61.5 NC_003085.1 + 8826 0.66 0.364556
Target:  5'- aGCCaGCGUcagGGCGacgaggaCGGCAGCggCCGUCAg -3'
miRNA:   3'- -CGG-CGCGa--CCGC-------GUCGUUGa-GGCGGU- -5'
11472 3' -61.5 NC_003085.1 + 22038 0.66 0.357039
Target:  5'- gGCUGCGCUGuacCGGCGAUUgCGCCc -3'
miRNA:   3'- -CGGCGCGACcgcGUCGUUGAgGCGGu -5'
11472 3' -61.5 NC_003085.1 + 30345 0.66 0.357039
Target:  5'- cGCUGuCGCggGGCGCAcuGCGGCgucuagcaucCCGCCc -3'
miRNA:   3'- -CGGC-GCGa-CCGCGU--CGUUGa---------GGCGGu -5'
11472 3' -61.5 NC_003085.1 + 37042 0.66 0.357039
Target:  5'- aGCCuccuCGgaG-CGCAGCGGCcCCGCCGg -3'
miRNA:   3'- -CGGc---GCgaCcGCGUCGUUGaGGCGGU- -5'
11472 3' -61.5 NC_003085.1 + 779 0.66 0.357039
Target:  5'- cGCCGCGCaacGGUGCGccCAugUUCGUCGu -3'
miRNA:   3'- -CGGCGCGa--CCGCGUc-GUugAGGCGGU- -5'
11472 3' -61.5 NC_003085.1 + 16180 0.66 0.357039
Target:  5'- gGCCGCGCUGGUucgaGGUGagccgugaccgcGCUCCucGCCGu -3'
miRNA:   3'- -CGGCGCGACCGcg--UCGU------------UGAGG--CGGU- -5'
11472 3' -61.5 NC_003085.1 + 42227 0.66 0.35621
Target:  5'- cCCGgGCUguccguaGGgGCAGCG-CUgCGCCAu -3'
miRNA:   3'- cGGCgCGA-------CCgCGUCGUuGAgGCGGU- -5'
11472 3' -61.5 NC_003085.1 + 29372 0.66 0.348815
Target:  5'- gGCCGCccggcagaacGCcaUGGCGgAGUuGCUgCGCCAg -3'
miRNA:   3'- -CGGCG----------CG--ACCGCgUCGuUGAgGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.