miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11472 5' -54.4 NC_003085.1 + 40892 0.66 0.772298
Target:  5'- cGGCGG-CAUG-CCacGGUUGuugcGGCGGg -3'
miRNA:   3'- -CCGCCgGUACaGGa-CCAACuu--CUGCC- -5'
11472 5' -54.4 NC_003085.1 + 24680 0.66 0.762111
Target:  5'- aGCGGCacCAUGUUCcGGUccuugUGcGGGCGGa -3'
miRNA:   3'- cCGCCG--GUACAGGaCCA-----ACuUCUGCC- -5'
11472 5' -54.4 NC_003085.1 + 25450 0.66 0.762111
Target:  5'- cGGCGGCCGguUUCUGGgu--GGuCGGc -3'
miRNA:   3'- -CCGCCGGUacAGGACCaacuUCuGCC- -5'
11472 5' -54.4 NC_003085.1 + 12173 0.66 0.762111
Target:  5'- aGUGGCCGUGguUCCaGGUgGgcGACGu -3'
miRNA:   3'- cCGCCGGUAC--AGGaCCAaCuuCUGCc -5'
11472 5' -54.4 NC_003085.1 + 21635 0.66 0.762111
Target:  5'- -aCGGCCAUGgcgCaggGGgUGAAGGCGa -3'
miRNA:   3'- ccGCCGGUACa--Gga-CCaACUUCUGCc -5'
11472 5' -54.4 NC_003085.1 + 46805 0.66 0.741345
Target:  5'- cGGUGGCCAcGUCCUu-----GGGCGGc -3'
miRNA:   3'- -CCGCCGGUaCAGGAccaacuUCUGCC- -5'
11472 5' -54.4 NC_003085.1 + 13400 0.66 0.730789
Target:  5'- -aCGaGCgAUGUCCUucGGUccauccgGAAGACGGg -3'
miRNA:   3'- ccGC-CGgUACAGGA--CCAa------CUUCUGCC- -5'
11472 5' -54.4 NC_003085.1 + 200 0.67 0.720135
Target:  5'- gGGUGGCCAUGaCgCaGGaa-GAGACGGa -3'
miRNA:   3'- -CCGCCGGUACaG-GaCCaacUUCUGCC- -5'
11472 5' -54.4 NC_003085.1 + 25165 0.67 0.709392
Target:  5'- cGGCGaCCGUGgCCUGGU----GGCGGu -3'
miRNA:   3'- -CCGCcGGUACaGGACCAacuuCUGCC- -5'
11472 5' -54.4 NC_003085.1 + 32049 0.67 0.698573
Target:  5'- aGGCGGCaCA--UCCUGGccUGGucccGGCGGu -3'
miRNA:   3'- -CCGCCG-GUacAGGACCa-ACUu---CUGCC- -5'
11472 5' -54.4 NC_003085.1 + 36555 0.67 0.698573
Target:  5'- uGGCGGCCGUGgcggggucgCCauugcacgGGaggcuucGAGGGCGGg -3'
miRNA:   3'- -CCGCCGGUACa--------GGa-------CCaa-----CUUCUGCC- -5'
11472 5' -54.4 NC_003085.1 + 21087 0.67 0.696401
Target:  5'- aGGaCGGCCA-GUCCUGccaccccuggGAcaGGGCGGa -3'
miRNA:   3'- -CC-GCCGGUaCAGGACcaa-------CU--UCUGCC- -5'
11472 5' -54.4 NC_003085.1 + 27777 0.68 0.665771
Target:  5'- aGCgGGCCAccucGUCCUGGaggcgcUGAAGcCGGa -3'
miRNA:   3'- cCG-CCGGUa---CAGGACCa-----ACUUCuGCC- -5'
11472 5' -54.4 NC_003085.1 + 21145 0.68 0.654759
Target:  5'- gGGCGGCCGgaagGUggaCUGGUacgugGAGGGCu- -3'
miRNA:   3'- -CCGCCGGUa---CAg--GACCAa----CUUCUGcc -5'
11472 5' -54.4 NC_003085.1 + 32049 0.68 0.632682
Target:  5'- gGGCGGCgaGUGgCCUGGggGAcAGcaauGCGGa -3'
miRNA:   3'- -CCGCCGg-UACaGGACCaaCU-UC----UGCC- -5'
11472 5' -54.4 NC_003085.1 + 7833 0.68 0.622742
Target:  5'- cGGCGGCCAaG-CCUGGgccauguucgaggaGAAGcgcGCGGa -3'
miRNA:   3'- -CCGCCGGUaCaGGACCaa------------CUUC---UGCC- -5'
11472 5' -54.4 NC_003085.1 + 45602 0.68 0.621638
Target:  5'- gGGCGcGCCGUcgacgcgccgugGUCCUGGaUGGgcAGuGCGGg -3'
miRNA:   3'- -CCGC-CGGUA------------CAGGACCaACU--UC-UGCC- -5'
11472 5' -54.4 NC_003085.1 + 47955 0.7 0.523727
Target:  5'- uGGCGGCCGUGaggcgcaccggCCgaGGcUGgcGACGGu -3'
miRNA:   3'- -CCGCCGGUACa----------GGa-CCaACuuCUGCC- -5'
11472 5' -54.4 NC_003085.1 + 5544 0.7 0.513162
Target:  5'- cGGCGGCCA--UCC-GGUUGGcGGACa- -3'
miRNA:   3'- -CCGCCGGUacAGGaCCAACU-UCUGcc -5'
11472 5' -54.4 NC_003085.1 + 24624 0.71 0.441011
Target:  5'- aGGCGagaaucugcGCCucggcGUCCUGGUUGAAagccgcgcgccgcGACGGg -3'
miRNA:   3'- -CCGC---------CGGua---CAGGACCAACUU-------------CUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.