miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11474 5' -53.9 NC_003085.1 + 32274 0.66 0.781156
Target:  5'- cGGUGGCCcgGGacUCGUCUcccgUCAGGu- -3'
miRNA:   3'- -CCACCGGuaCCccAGCAGG----AGUUUug -5'
11474 5' -53.9 NC_003085.1 + 41397 0.66 0.770958
Target:  5'- gGGUgacGGCCGUGuuGUCGgagCCUCGGgcGGCa -3'
miRNA:   3'- -CCA---CCGGUACccCAGCa--GGAGUU--UUG- -5'
11474 5' -53.9 NC_003085.1 + 15237 0.66 0.76993
Target:  5'- cGGUGGCCAUuacgccguaGGGaCGUUgacccaugagagaCUCAGAGCg -3'
miRNA:   3'- -CCACCGGUAc--------CCCaGCAG-------------GAGUUUUG- -5'
11474 5' -53.9 NC_003085.1 + 24149 0.67 0.70708
Target:  5'- cGGUGGCCAccacGGcGUCGUCCa------ -3'
miRNA:   3'- -CCACCGGUa---CCcCAGCAGGaguuuug -5'
11474 5' -53.9 NC_003085.1 + 33336 0.67 0.696098
Target:  5'- cGUGGUCAUccGGGcGUCGaCCUcCAGGAUg -3'
miRNA:   3'- cCACCGGUA--CCC-CAGCaGGA-GUUUUG- -5'
11474 5' -53.9 NC_003085.1 + 8160 0.67 0.696098
Target:  5'- cGGUGGgCGUGaGGUCGUCga-AGAGCc -3'
miRNA:   3'- -CCACCgGUACcCCAGCAGgagUUUUG- -5'
11474 5' -53.9 NC_003085.1 + 45926 0.67 0.685051
Target:  5'- cGUGGuCCAaGGGG-CGcacUCCUCAAuGACg -3'
miRNA:   3'- cCACC-GGUaCCCCaGC---AGGAGUU-UUG- -5'
11474 5' -53.9 NC_003085.1 + 12766 0.68 0.648289
Target:  5'- aGGUGGCC-UGGGGUgaugccccugccgcCGUUgUCGGGc- -3'
miRNA:   3'- -CCACCGGuACCCCA--------------GCAGgAGUUUug -5'
11474 5' -53.9 NC_003085.1 + 34215 0.69 0.573519
Target:  5'- --cGGCCuccGGGUCGUCCUCc---- -3'
miRNA:   3'- ccaCCGGuacCCCAGCAGGAGuuuug -5'
11474 5' -53.9 NC_003085.1 + 9454 0.7 0.508332
Target:  5'- cGGgaagcgGGCCGUGgucgacgcuGGGUCGUUCUCcGGAUa -3'
miRNA:   3'- -CCa-----CCGGUAC---------CCCAGCAGGAGuUUUG- -5'
11474 5' -53.9 NC_003085.1 + 38950 0.71 0.456504
Target:  5'- uGGcGGCU---GGGUCGUCCUCAacgGAGCc -3'
miRNA:   3'- -CCaCCGGuacCCCAGCAGGAGU---UUUG- -5'
11474 5' -53.9 NC_003085.1 + 3789 0.74 0.328467
Target:  5'- uGGUGaGCCAgGGGGg---CCUCGGAGCg -3'
miRNA:   3'- -CCAC-CGGUaCCCCagcaGGAGUUUUG- -5'
11474 5' -53.9 NC_003085.1 + 45704 0.78 0.189534
Target:  5'- uGGUGGCCA-GGGGUgGU-UUCAAGGCa -3'
miRNA:   3'- -CCACCGGUaCCCCAgCAgGAGUUUUG- -5'
11474 5' -53.9 NC_003085.1 + 19158 1.11 0.000904
Target:  5'- gGGUGGCCAUGGGGUCGUCCUCAAAACc -3'
miRNA:   3'- -CCACCGGUACCCCAGCAGGAGUUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.