miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11475 3' -61.9 NC_003085.1 + 40018 0.66 0.38758
Target:  5'- aCGGcCCGCUUCCCgUacGgGCCGg- -3'
miRNA:   3'- gGCCaGGCGAAGGGgGaaCgCGGCga -5'
11475 3' -61.9 NC_003085.1 + 35523 0.66 0.38758
Target:  5'- aCGcUCCGCUUCUUCUUcgGCGCgCGCc -3'
miRNA:   3'- gGCcAGGCGAAGGGGGAa-CGCG-GCGa -5'
11475 3' -61.9 NC_003085.1 + 24824 0.66 0.368914
Target:  5'- -aGGUUCGCcUCCUCCgccgaggugaaGCGCUGCa -3'
miRNA:   3'- ggCCAGGCGaAGGGGGaa---------CGCGGCGa -5'
11475 3' -61.9 NC_003085.1 + 44237 0.66 0.36228
Target:  5'- -aGG-CCGCUUCCUgCCgggccGCGUCGCg -3'
miRNA:   3'- ggCCaGGCGAAGGG-GGaa---CGCGGCGa -5'
11475 3' -61.9 NC_003085.1 + 34543 0.67 0.330371
Target:  5'- gCGG-CCGCgagcgCCaccagccggCCCgcgUGCGCCGCa -3'
miRNA:   3'- gGCCaGGCGaa---GG---------GGGa--ACGCGGCGa -5'
11475 3' -61.9 NC_003085.1 + 14968 0.67 0.330371
Target:  5'- aCGGUCCGUggUgCCCUgggagGCGCCcCa -3'
miRNA:   3'- gGCCAGGCGaaGgGGGAa----CGCGGcGa -5'
11475 3' -61.9 NC_003085.1 + 28970 0.67 0.322724
Target:  5'- gCGGUaCCGCUugacgauuuccuUCCCCUgcgUGUGCCa-- -3'
miRNA:   3'- gGCCA-GGCGA------------AGGGGGa--ACGCGGcga -5'
11475 3' -61.9 NC_003085.1 + 33108 0.67 0.307829
Target:  5'- cCUGGguggCGCUgucgaacgCUCCCUaGCGCCGCa -3'
miRNA:   3'- -GGCCag--GCGAa-------GGGGGAaCGCGGCGa -5'
11475 3' -61.9 NC_003085.1 + 309 0.67 0.30564
Target:  5'- cCCcGUCCGCUgCCCCCgcgaagaagaagccCGCCGCc -3'
miRNA:   3'- -GGcCAGGCGAaGGGGGaac-----------GCGGCGa -5'
11475 3' -61.9 NC_003085.1 + 12033 0.68 0.286482
Target:  5'- gCCGGUgCUGCgcgaCUUCgUGCGCCGCUu -3'
miRNA:   3'- -GGCCA-GGCGaag-GGGGaACGCGGCGA- -5'
11475 3' -61.9 NC_003085.1 + 30400 0.68 0.286482
Target:  5'- cCCGGcgCCuGC-UCCgCCgcGCGCCGCg -3'
miRNA:   3'- -GGCCa-GG-CGaAGGgGGaaCGCGGCGa -5'
11475 3' -61.9 NC_003085.1 + 47473 0.68 0.272909
Target:  5'- aCCGGUCCGCguaCUuaCUgGCGCUGCc -3'
miRNA:   3'- -GGCCAGGCGaa-GGggGAaCGCGGCGa -5'
11475 3' -61.9 NC_003085.1 + 8777 0.68 0.272909
Target:  5'- cCCGGa-CGUcgUCCCCC-UGCGCCGg- -3'
miRNA:   3'- -GGCCagGCGa-AGGGGGaACGCGGCga -5'
11475 3' -61.9 NC_003085.1 + 38951 0.68 0.272909
Target:  5'- uUCGGgcgugcgcuUCCGCggaUUCUCCagUGCGCCGCg -3'
miRNA:   3'- -GGCC---------AGGCGa--AGGGGGa-ACGCGGCGa -5'
11475 3' -61.9 NC_003085.1 + 6743 0.68 0.272909
Target:  5'- aUGGUCCGaCUgCCCggCCUgccGCGCCGUg -3'
miRNA:   3'- gGCCAGGC-GAaGGG--GGAa--CGCGGCGa -5'
11475 3' -61.9 NC_003085.1 + 41650 0.68 0.266318
Target:  5'- -gGGUcaaucaacgaCCGCUUCCCaCCcugUUGgGCCGCg -3'
miRNA:   3'- ggCCA----------GGCGAAGGG-GG---AACgCGGCGa -5'
11475 3' -61.9 NC_003085.1 + 22742 0.68 0.266318
Target:  5'- aCCGGcgCCGCgccgUCaCCgCCcUGCGCgCGCUc -3'
miRNA:   3'- -GGCCa-GGCGa---AG-GG-GGaACGCG-GCGA- -5'
11475 3' -61.9 NC_003085.1 + 7347 0.69 0.247318
Target:  5'- gCGGgcuacaCGCg-CCCCUggGCGCCGCUc -3'
miRNA:   3'- gGCCag----GCGaaGGGGGaaCGCGGCGA- -5'
11475 3' -61.9 NC_003085.1 + 17681 0.69 0.223747
Target:  5'- gCCGGgCCGCUUCgCCCaacCGCaCGCUa -3'
miRNA:   3'- -GGCCaGGCGAAGgGGGaacGCG-GCGA- -5'
11475 3' -61.9 NC_003085.1 + 17401 0.69 0.21816
Target:  5'- -aGGUCCGCauugcugUCCCCCagGCcacucGCCGCc -3'
miRNA:   3'- ggCCAGGCGa------AGGGGGaaCG-----CGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.