miRNA display CGI


Results 1 - 20 of 103 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11475 5' -56.5 NC_003085.1 + 973 0.66 0.605531
Target:  5'- gCAGC-GCuCAA--CGAGGCGCuugccgAGAGCa -3'
miRNA:   3'- aGUCGuCG-GUUacGCUCCGCG------UCUCG- -5'
11475 5' -56.5 NC_003085.1 + 15967 0.66 0.605531
Target:  5'- cUUGGCcGCUGGgagGUGGGGCGU-GAGCg -3'
miRNA:   3'- -AGUCGuCGGUUa--CGCUCCGCGuCUCG- -5'
11475 5' -56.5 NC_003085.1 + 25555 0.66 0.605531
Target:  5'- aUAGCGGgCAGaagcagGCG-GGCGCGGAccGCc -3'
miRNA:   3'- aGUCGUCgGUUa-----CGCuCCGCGUCU--CG- -5'
11475 5' -56.5 NC_003085.1 + 19245 0.66 0.604419
Target:  5'- aCGGCAcacacauGCac-UGCGAGGUGCucuuccGAGCg -3'
miRNA:   3'- aGUCGU-------CGguuACGCUCCGCGu-----CUCG- -5'
11475 5' -56.5 NC_003085.1 + 10599 0.66 0.598859
Target:  5'- gCAGCccaggcugagacauGGCCAAUGCaccuccggcuguguGGGGCGCcggcAGAGg -3'
miRNA:   3'- aGUCG--------------UCGGUUACG--------------CUCCGCG----UCUCg -5'
11475 5' -56.5 NC_003085.1 + 36555 0.66 0.594417
Target:  5'- -uGGCGGCCGugGCGGGGuCGCcauuGCa -3'
miRNA:   3'- agUCGUCGGUuaCGCUCC-GCGucu-CG- -5'
11475 5' -56.5 NC_003085.1 + 20600 0.66 0.594417
Target:  5'- cUCGGCAGCgcc-GCGGaagucgggcGGCGCGGGuGCu -3'
miRNA:   3'- -AGUCGUCGguuaCGCU---------CCGCGUCU-CG- -5'
11475 5' -56.5 NC_003085.1 + 37056 0.66 0.594417
Target:  5'- gCAGCGGCCcc-GCcGGGUcgaGCAGcAGCa -3'
miRNA:   3'- aGUCGUCGGuuaCGcUCCG---CGUC-UCG- -5'
11475 5' -56.5 NC_003085.1 + 9148 0.66 0.594417
Target:  5'- cCAGCccuuGCCg--GCGAGGUagAGGGCg -3'
miRNA:   3'- aGUCGu---CGGuuaCGCUCCGcgUCUCG- -5'
11475 5' -56.5 NC_003085.1 + 1323 0.66 0.594417
Target:  5'- -aGGCuGgCAcUGCGAuGGCGCuGGAGUa -3'
miRNA:   3'- agUCGuCgGUuACGCU-CCGCG-UCUCG- -5'
11475 5' -56.5 NC_003085.1 + 32070 0.66 0.583335
Target:  5'- aCAGCAaugcggaccugaGCCGAgGCGAGuaCGaCAGAGCc -3'
miRNA:   3'- aGUCGU------------CGGUUaCGCUCc-GC-GUCUCG- -5'
11475 5' -56.5 NC_003085.1 + 40992 0.66 0.583335
Target:  5'- cUCGGCGGCCuucugGCGcGucaUGUAGAGCg -3'
miRNA:   3'- -AGUCGUCGGuua--CGCuCc--GCGUCUCG- -5'
11475 5' -56.5 NC_003085.1 + 6310 0.66 0.583335
Target:  5'- -gAGCAGgCCGA-GCGGGaaccGCGCAGcaugGGCg -3'
miRNA:   3'- agUCGUC-GGUUaCGCUC----CGCGUC----UCG- -5'
11475 5' -56.5 NC_003085.1 + 49047 0.66 0.583335
Target:  5'- --cGCGGCCGAgacugGCGuccagGGaGCGCAG-GCg -3'
miRNA:   3'- aguCGUCGGUUa----CGC-----UC-CGCGUCuCG- -5'
11475 5' -56.5 NC_003085.1 + 40110 0.66 0.583335
Target:  5'- gUCGGCcugcguccacaGGCCGAUGaagaaGAGGCGgGccauuggugaGAGCa -3'
miRNA:   3'- -AGUCG-----------UCGGUUACg----CUCCGCgU----------CUCG- -5'
11475 5' -56.5 NC_003085.1 + 7623 0.66 0.572295
Target:  5'- cCAGC-GCCGG-GCGggacucaugGGGCGCuuGGGCg -3'
miRNA:   3'- aGUCGuCGGUUaCGC---------UCCGCGu-CUCG- -5'
11475 5' -56.5 NC_003085.1 + 14787 0.66 0.571194
Target:  5'- aCGGCgcggggugcaaaaGGCCGAcauccuccGCGAGGCcaucGCGGAGUg -3'
miRNA:   3'- aGUCG-------------UCGGUUa-------CGCUCCG----CGUCUCG- -5'
11475 5' -56.5 NC_003085.1 + 115 0.66 0.561306
Target:  5'- gCGGCGGgcccCCAAUGUGgggagaGGGCGggaCGGAGCu -3'
miRNA:   3'- aGUCGUC----GGUUACGC------UCCGC---GUCUCG- -5'
11475 5' -56.5 NC_003085.1 + 17922 0.66 0.561306
Target:  5'- aCGGguGCCugcgcccaGCGcGGCGCucuGGGCu -3'
miRNA:   3'- aGUCguCGGuua-----CGCuCCGCGu--CUCG- -5'
11475 5' -56.5 NC_003085.1 + 26990 0.66 0.561306
Target:  5'- cCGGCugGGCUAccGCGAguGGUGCAcGGGCc -3'
miRNA:   3'- aGUCG--UCGGUuaCGCU--CCGCGU-CUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.