miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11476 5' -55.9 NC_003085.1 + 22759 0.66 0.61499
Target:  5'- -aCCGCCCUGCgcgcgcucgagugCCUUgucguaGUCGuCCUGGc -3'
miRNA:   3'- aaGGCGGGAUG-------------GGAAa-----UAGC-GGACCu -5'
11476 5' -55.9 NC_003085.1 + 24507 0.66 0.604924
Target:  5'- -gCCGCCgUACUCc--GUCGUCUGGu -3'
miRNA:   3'- aaGGCGGgAUGGGaaaUAGCGGACCu -5'
11476 5' -55.9 NC_003085.1 + 30389 0.66 0.593763
Target:  5'- cUCCGUCCggGCCCgg---CGCCUGc- -3'
miRNA:   3'- aAGGCGGGa-UGGGaaauaGCGGACcu -5'
11476 5' -55.9 NC_003085.1 + 37874 0.66 0.591535
Target:  5'- -gCCGCCCUGCCCcguuccaGCCaGGc -3'
miRNA:   3'- aaGGCGGGAUGGGaaauag-CGGaCCu -5'
11476 5' -55.9 NC_003085.1 + 17807 0.67 0.560518
Target:  5'- -aCCGCCCgcCCCggUGcCGCCUGu- -3'
miRNA:   3'- aaGGCGGGauGGGaaAUaGCGGACcu -5'
11476 5' -55.9 NC_003085.1 + 15822 0.67 0.549545
Target:  5'- -gCCGCCgugGCCCUcu-UCGCCUGuGGu -3'
miRNA:   3'- aaGGCGGga-UGGGAaauAGCGGAC-CU- -5'
11476 5' -55.9 NC_003085.1 + 33083 0.67 0.549545
Target:  5'- -cCUGCCaacuuUGCCCg----CGCCUGGAa -3'
miRNA:   3'- aaGGCGGg----AUGGGaaauaGCGGACCU- -5'
11476 5' -55.9 NC_003085.1 + 10646 0.67 0.538639
Target:  5'- gUgCGCCCUGCUCaca--CGCCUGGc -3'
miRNA:   3'- aAgGCGGGAUGGGaaauaGCGGACCu -5'
11476 5' -55.9 NC_003085.1 + 17609 0.67 0.527807
Target:  5'- cUCCGCCgUGCCUUccGUCGCgUgccGGAg -3'
miRNA:   3'- aAGGCGGgAUGGGAaaUAGCGgA---CCU- -5'
11476 5' -55.9 NC_003085.1 + 30378 0.67 0.527807
Target:  5'- -cCCGCCCggGCCaucgg-UGCCUGGGc -3'
miRNA:   3'- aaGGCGGGa-UGGgaaauaGCGGACCU- -5'
11476 5' -55.9 NC_003085.1 + 19141 0.67 0.517058
Target:  5'- gUCCGCCaggGCCCgcuggGUgGCCaUGGGg -3'
miRNA:   3'- aAGGCGGga-UGGGaaa--UAgCGG-ACCU- -5'
11476 5' -55.9 NC_003085.1 + 2437 0.7 0.387302
Target:  5'- -gCUGCCCUACCCUgcaacgcgccGUCgucucugaGCCUGGGg -3'
miRNA:   3'- aaGGCGGGAUGGGAaa--------UAG--------CGGACCU- -5'
11476 5' -55.9 NC_003085.1 + 27292 0.71 0.335065
Target:  5'- cUUCGCCauuuccugCUGuCCCUUcAUCGCCUGGGc -3'
miRNA:   3'- aAGGCGG--------GAU-GGGAAaUAGCGGACCU- -5'
11476 5' -55.9 NC_003085.1 + 44287 0.74 0.221717
Target:  5'- -gCCGCCCUGCCUUccg-CGCCaGGAu -3'
miRNA:   3'- aaGGCGGGAUGGGAaauaGCGGaCCU- -5'
11476 5' -55.9 NC_003085.1 + 11574 0.76 0.15096
Target:  5'- -aCCGUCCUGCCCg----CGCCUGGc -3'
miRNA:   3'- aaGGCGGGAUGGGaaauaGCGGACCu -5'
11476 5' -55.9 NC_003085.1 + 18292 1.06 0.000951
Target:  5'- cUUCCGCCCUACCCUUUAUCGCCUGGAa -3'
miRNA:   3'- -AAGGCGGGAUGGGAAAUAGCGGACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.