miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11478 5' -57.3 NC_003085.1 + 17228 0.66 0.591846
Target:  5'- uGGuGAGCAcGcGGCGCCcCGUGCUcuGGg -3'
miRNA:   3'- gCC-CUUGU-CuCCGCGGuGCAUGA--CCa -5'
11478 5' -57.3 NC_003085.1 + 551 0.66 0.580983
Target:  5'- uGGcGAACGgcgcGAGGCGgCGCG-GCUGGc -3'
miRNA:   3'- gCC-CUUGU----CUCCGCgGUGCaUGACCa -5'
11478 5' -57.3 NC_003085.1 + 14669 0.66 0.580983
Target:  5'- gCGGcaaGGACuuGGAGGCGCCGUGgcGCUGGa -3'
miRNA:   3'- -GCC---CUUG--UCUCCGCGGUGCa-UGACCa -5'
11478 5' -57.3 NC_003085.1 + 15976 0.66 0.580983
Target:  5'- uGGGAGguGGGGCGUgaGCGUcagGGUg -3'
miRNA:   3'- gCCCUUguCUCCGCGg-UGCAugaCCA- -5'
11478 5' -57.3 NC_003085.1 + 19215 0.66 0.579899
Target:  5'- gCGGGGGCuG-GGCGCCGCGcaaggccUGCgccaGGg -3'
miRNA:   3'- -GCCCUUGuCuCCGCGGUGC-------AUGa---CCa -5'
11478 5' -57.3 NC_003085.1 + 32890 0.66 0.559391
Target:  5'- cCGGGucgucGCAGuggccGGGCGCCACGcagUUGGa -3'
miRNA:   3'- -GCCCu----UGUC-----UCCGCGGUGCau-GACCa -5'
11478 5' -57.3 NC_003085.1 + 34313 0.66 0.559391
Target:  5'- aGGGGGCAGuAGuGCGUCuCGUGCUcGUc -3'
miRNA:   3'- gCCCUUGUC-UC-CGCGGuGCAUGAcCA- -5'
11478 5' -57.3 NC_003085.1 + 17443 0.67 0.536967
Target:  5'- uCGGGGACcauggcgAGucccGGCGCU-CGUACUGGc -3'
miRNA:   3'- -GCCCUUG-------UCu---CCGCGGuGCAUGACCa -5'
11478 5' -57.3 NC_003085.1 + 13579 0.67 0.527452
Target:  5'- uGGGAcuccGCGGcccGGUGUCaucGCGUACUGGa -3'
miRNA:   3'- gCCCU----UGUCu--CCGCGG---UGCAUGACCa -5'
11478 5' -57.3 NC_003085.1 + 19715 0.67 0.527452
Target:  5'- gGuGGGGCGcGAcGGCgGCCACGUcCUGGg -3'
miRNA:   3'- gC-CCUUGU-CU-CCG-CGGUGCAuGACCa -5'
11478 5' -57.3 NC_003085.1 + 1192 0.67 0.526398
Target:  5'- cCGGGGcgACcauuGAccaaccucaccccGGCGCCGCGcUGCUGGa -3'
miRNA:   3'- -GCCCU--UGu---CU-------------CCGCGGUGC-AUGACCa -5'
11478 5' -57.3 NC_003085.1 + 9002 0.67 0.516953
Target:  5'- -aGGAGucccacCAGuGGCGCUACGUaggGCUGGa -3'
miRNA:   3'- gcCCUU------GUCuCCGCGGUGCA---UGACCa -5'
11478 5' -57.3 NC_003085.1 + 30521 0.68 0.479901
Target:  5'- -aGGAACAgGAGGCGgCGCGUggagcacagcaggcgAUUGGUa -3'
miRNA:   3'- gcCCUUGU-CUCCGCgGUGCA---------------UGACCA- -5'
11478 5' -57.3 NC_003085.1 + 24127 0.69 0.40818
Target:  5'- gGGGAACAGcaacGGCGgCugGUACUccGGc -3'
miRNA:   3'- gCCCUUGUCu---CCGCgGugCAUGA--CCa -5'
11478 5' -57.3 NC_003085.1 + 32232 0.71 0.314871
Target:  5'- --aGAGCAcGGGGCGCCGCGUGCUc-- -3'
miRNA:   3'- gccCUUGU-CUCCGCGGUGCAUGAcca -5'
11478 5' -57.3 NC_003085.1 + 49067 0.72 0.278109
Target:  5'- aGGGAGCGcAGGCGCUugcCGUAgaGGUa -3'
miRNA:   3'- gCCCUUGUcUCCGCGGu--GCAUgaCCA- -5'
11478 5' -57.3 NC_003085.1 + 16308 1.06 0.000849
Target:  5'- uCGGGAACAGAGGCGCCACGUACUGGUc -3'
miRNA:   3'- -GCCCUUGUCUCCGCGGUGCAUGACCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.