miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11479 5' -56.7 NC_003085.1 + 35387 0.66 0.643132
Target:  5'- cCGGCggaGUCCGAGGCGcuCGCaGAUGGc -3'
miRNA:   3'- -GCUGaggUAGGCUCCGCc-GUG-CUACU- -5'
11479 5' -56.7 NC_003085.1 + 39198 0.66 0.632219
Target:  5'- aGACa-CGUCCGuacuuuccAGGUGGCACGgcGAu -3'
miRNA:   3'- gCUGagGUAGGC--------UCCGCCGUGCuaCU- -5'
11479 5' -56.7 NC_003085.1 + 26198 0.66 0.632219
Target:  5'- gCGACgagcugcgCCuuGUgCGcGGGCGGCGCGGUGc -3'
miRNA:   3'- -GCUGa-------GG--UAgGC-UCCGCCGUGCUACu -5'
11479 5' -56.7 NC_003085.1 + 22493 0.66 0.632219
Target:  5'- cCGGCUgCGcaggCCGAGcuCGGaCGCGAUGAg -3'
miRNA:   3'- -GCUGAgGUa---GGCUCc-GCC-GUGCUACU- -5'
11479 5' -56.7 NC_003085.1 + 604 0.66 0.610404
Target:  5'- uCGACUggcgCCGUCCugggcgcgcucGAGGCuGGCGCGGa-- -3'
miRNA:   3'- -GCUGA----GGUAGG-----------CUCCG-CCGUGCUacu -5'
11479 5' -56.7 NC_003085.1 + 31659 0.67 0.588662
Target:  5'- aGGCggCA-CCGGGGCGG-GCGGUGGa -3'
miRNA:   3'- gCUGagGUaGGCUCCGCCgUGCUACU- -5'
11479 5' -56.7 NC_003085.1 + 551 0.67 0.57784
Target:  5'- uGGCgaaCggCgCGAGGCGGCGCGGcUGGc -3'
miRNA:   3'- gCUGag-GuaG-GCUCCGCCGUGCU-ACU- -5'
11479 5' -56.7 NC_003085.1 + 45548 0.67 0.545671
Target:  5'- uCGGCUUCcaGUUCGAGGCGucgcaGCACGAg-- -3'
miRNA:   3'- -GCUGAGG--UAGGCUCCGC-----CGUGCUacu -5'
11479 5' -56.7 NC_003085.1 + 1125 0.68 0.5141
Target:  5'- cCGAUgUCCAUcggCCGAGaGCGuGgGCGAUGAg -3'
miRNA:   3'- -GCUG-AGGUA---GGCUC-CGC-CgUGCUACU- -5'
11479 5' -56.7 NC_003085.1 + 7317 0.68 0.5141
Target:  5'- cCGACggCCAUCgCgGAGGCGGCugaggACGcgGGc -3'
miRNA:   3'- -GCUGa-GGUAG-G-CUCCGCCG-----UGCuaCU- -5'
11479 5' -56.7 NC_003085.1 + 22923 0.68 0.49347
Target:  5'- gGGCgaagCCcUCCGAGGCcgcgucgacGGCGCGgcGAa -3'
miRNA:   3'- gCUGa---GGuAGGCUCCG---------CCGUGCuaCU- -5'
11479 5' -56.7 NC_003085.1 + 44064 0.68 0.473228
Target:  5'- --cCUCCAUCCacuuGGCGGCguaggccucgACGGUGAc -3'
miRNA:   3'- gcuGAGGUAGGcu--CCGCCG----------UGCUACU- -5'
11479 5' -56.7 NC_003085.1 + 35318 0.68 0.473228
Target:  5'- -cACUCCGUacggguacaCCGcGGGCaGCACGGUGAu -3'
miRNA:   3'- gcUGAGGUA---------GGC-UCCGcCGUGCUACU- -5'
11479 5' -56.7 NC_003085.1 + 31159 0.69 0.453412
Target:  5'- gGACggCCAgcgCCGGGGCGuGCAccgccCGGUGGc -3'
miRNA:   3'- gCUGa-GGUa--GGCUCCGC-CGU-----GCUACU- -5'
11479 5' -56.7 NC_003085.1 + 5543 0.71 0.33685
Target:  5'- gCGGCggCCAUCCGGuuGGCGGaCAUGcUGAa -3'
miRNA:   3'- -GCUGa-GGUAGGCU--CCGCC-GUGCuACU- -5'
11479 5' -56.7 NC_003085.1 + 24214 0.72 0.313244
Target:  5'- aCGACgCCcgCCGcggagcgcaccaGGGCGGCGcCGGUGAu -3'
miRNA:   3'- -GCUGaGGuaGGC------------UCCGCCGU-GCUACU- -5'
11479 5' -56.7 NC_003085.1 + 42099 0.72 0.313244
Target:  5'- gCGGCUCCGUgUCGAGGUGGCG-GAgGAc -3'
miRNA:   3'- -GCUGAGGUA-GGCUCCGCCGUgCUaCU- -5'
11479 5' -56.7 NC_003085.1 + 47966 0.73 0.263103
Target:  5'- aGGCgcaCCggCCGAGGCuGGCgACGGUGAc -3'
miRNA:   3'- gCUGa--GGuaGGCUCCG-CCG-UGCUACU- -5'
11479 5' -56.7 NC_003085.1 + 41185 0.76 0.179134
Target:  5'- gGGCUCCAgcguccagagacgcCCGAGGCguuggacugcucuGGCACGGUGAc -3'
miRNA:   3'- gCUGAGGUa-------------GGCUCCG-------------CCGUGCUACU- -5'
11479 5' -56.7 NC_003085.1 + 16080 1.09 0.00074
Target:  5'- cCGACUCCAUCCGAGGCGGCACGAUGAc -3'
miRNA:   3'- -GCUGAGGUAGGCUCCGCCGUGCUACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.