miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11481 3' -59.2 NC_003085.1 + 11556 0.66 0.442513
Target:  5'- gUCGGaaagaagggcAGcGCCGUcGGCGUGGugcccaccaGCACCUc -3'
miRNA:   3'- aAGCU----------UC-CGGCAaCCGCACC---------CGUGGA- -5'
11481 3' -59.2 NC_003085.1 + 40770 0.66 0.423348
Target:  5'- cUCGuguGGCugaCGUUGGCGgacGGCACCc -3'
miRNA:   3'- aAGCuu-CCG---GCAACCGCac-CCGUGGa -5'
11481 3' -59.2 NC_003085.1 + 7752 0.66 0.423348
Target:  5'- gUUGGAGGCCGUgaaGCGUGaGCgaGCCg -3'
miRNA:   3'- aAGCUUCCGGCAac-CGCACcCG--UGGa -5'
11481 3' -59.2 NC_003085.1 + 47328 0.66 0.413954
Target:  5'- -gCGggGGCCGccguccucGGacguguacuUGUGGGCGCCg -3'
miRNA:   3'- aaGCuuCCGGCaa------CC---------GCACCCGUGGa -5'
11481 3' -59.2 NC_003085.1 + 4933 0.67 0.404689
Target:  5'- gUCGaAAGaGUCGUccGGCGggugcUGGGCACCa -3'
miRNA:   3'- aAGC-UUC-CGGCAa-CCGC-----ACCCGUGGa -5'
11481 3' -59.2 NC_003085.1 + 19310 0.67 0.36897
Target:  5'- -gCGggGGUgaCGUccuGCGUGGGCugCUg -3'
miRNA:   3'- aaGCuuCCG--GCAac-CGCACCCGugGA- -5'
11481 3' -59.2 NC_003085.1 + 2647 0.68 0.335472
Target:  5'- -cCGcuuGGGCCGUggUGGCGUcacguuguaccgGGGCACUc -3'
miRNA:   3'- aaGCu--UCCGGCA--ACCGCA------------CCCGUGGa -5'
11481 3' -59.2 NC_003085.1 + 36590 0.68 0.327453
Target:  5'- cUUCGAGGGCgGgcacgggUGGCGgaaGGGCAaCUUg -3'
miRNA:   3'- -AAGCUUCCGgCa------ACCGCa--CCCGU-GGA- -5'
11481 3' -59.2 NC_003085.1 + 26919 0.68 0.327453
Target:  5'- aUCGGcaAGGCCGUUGGCcUGcauGUACCg -3'
miRNA:   3'- aAGCU--UCCGGCAACCGcACc--CGUGGa -5'
11481 3' -59.2 NC_003085.1 + 36653 0.68 0.327453
Target:  5'- -cCGcccGGaCCGUcagGGCGUGGaGCACCUg -3'
miRNA:   3'- aaGCuu-CC-GGCAa--CCGCACC-CGUGGA- -5'
11481 3' -59.2 NC_003085.1 + 36547 0.69 0.296803
Target:  5'- aUCGAuucuggcGGCCG-UGGCG-GGGuCGCCa -3'
miRNA:   3'- aAGCUu------CCGGCaACCGCaCCC-GUGGa -5'
11481 3' -59.2 NC_003085.1 + 24399 0.71 0.224094
Target:  5'- -aCG-GGGCCGUgccGGUggacccgacgGUGGGCACCUa -3'
miRNA:   3'- aaGCuUCCGGCAa--CCG----------CACCCGUGGA- -5'
11481 3' -59.2 NC_003085.1 + 13566 0.73 0.15823
Target:  5'- -gCGAgcaAGGCgCGcgUGGaCGUGGGCACCg -3'
miRNA:   3'- aaGCU---UCCG-GCa-ACC-GCACCCGUGGa -5'
11481 3' -59.2 NC_003085.1 + 15857 1.05 0.000565
Target:  5'- cUUCGAAGGCCGUUGGCGUGGGCACCUg -3'
miRNA:   3'- -AAGCUUCCGGCAACCGCACCCGUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.