miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11481 5' -55.5 NC_003085.1 + 22152 0.66 0.655107
Target:  5'- gGugGUGgcCCAGGCgaugaaGGGACAGCa--- -3'
miRNA:   3'- aCugCACa-GGUCCG------CCUUGUCGguua -5'
11481 5' -55.5 NC_003085.1 + 48107 0.66 0.643891
Target:  5'- gGAUGUagaGcCCAGGCGGA--AGCCGu- -3'
miRNA:   3'- aCUGCA---CaGGUCCGCCUugUCGGUua -5'
11481 5' -55.5 NC_003085.1 + 48317 0.66 0.632665
Target:  5'- -aGCGaGUCUcGGCGGAGuccccCAGCCGAUg -3'
miRNA:   3'- acUGCaCAGGuCCGCCUU-----GUCGGUUA- -5'
11481 5' -55.5 NC_003085.1 + 4177 0.66 0.61022
Target:  5'- aGACagGUGUUgAGGUGGAGCAGaCgCAGg -3'
miRNA:   3'- aCUG--CACAGgUCCGCCUUGUC-G-GUUa -5'
11481 5' -55.5 NC_003085.1 + 25724 0.67 0.587854
Target:  5'- cGACGUGUCCuucGGCGccACGGUgGGg -3'
miRNA:   3'- aCUGCACAGGu--CCGCcuUGUCGgUUa -5'
11481 5' -55.5 NC_003085.1 + 48497 0.67 0.576725
Target:  5'- cGGCGUGUCCuGcccCGGcAGCGGCCu-- -3'
miRNA:   3'- aCUGCACAGGuCc--GCC-UUGUCGGuua -5'
11481 5' -55.5 NC_003085.1 + 35769 0.67 0.565643
Target:  5'- gGugGUGcUUCGcGGCGcGACGGCCGGUg -3'
miRNA:   3'- aCugCAC-AGGU-CCGCcUUGUCGGUUA- -5'
11481 5' -55.5 NC_003085.1 + 40697 0.68 0.532764
Target:  5'- gGACGacGUCCGGGUGcuGGACGcGCCGGUg -3'
miRNA:   3'- aCUGCa-CAGGUCCGC--CUUGU-CGGUUA- -5'
11481 5' -55.5 NC_003085.1 + 4108 0.68 0.521954
Target:  5'- gGGCG-GUCCAGGCuGc-CAGCCAc- -3'
miRNA:   3'- aCUGCaCAGGUCCGcCuuGUCGGUua -5'
11481 5' -55.5 NC_003085.1 + 539 0.68 0.490063
Target:  5'- cGACGUucGgcagCCAgGGCGGggUGGCCGu- -3'
miRNA:   3'- aCUGCA--Ca---GGU-CCGCCuuGUCGGUua -5'
11481 5' -55.5 NC_003085.1 + 18118 0.69 0.449024
Target:  5'- cGGCG----CGGGCGGGACGGCCGGc -3'
miRNA:   3'- aCUGCacagGUCCGCCUUGUCGGUUa -5'
11481 5' -55.5 NC_003085.1 + 41403 0.7 0.400524
Target:  5'- cGGcCGUGUugucggagccUCGGGCGGcAACAGCCAu- -3'
miRNA:   3'- aCU-GCACA----------GGUCCGCC-UUGUCGGUua -5'
11481 5' -55.5 NC_003085.1 + 30748 0.7 0.391231
Target:  5'- aGGCGcGUCCcgucucgucAGGCGGGGCGGgCCAc- -3'
miRNA:   3'- aCUGCaCAGG---------UCCGCCUUGUC-GGUua -5'
11481 5' -55.5 NC_003085.1 + 45855 0.72 0.283774
Target:  5'- cGGCGcacGUCCAGGCGGA---GCCGGUg -3'
miRNA:   3'- aCUGCa--CAGGUCCGCCUuguCGGUUA- -5'
11481 5' -55.5 NC_003085.1 + 12819 0.78 0.125047
Target:  5'- cUGACG-GUCCGGGCGGAugcgcuguugGCcGCCAAUg -3'
miRNA:   3'- -ACUGCaCAGGUCCGCCU----------UGuCGGUUA- -5'
11481 5' -55.5 NC_003085.1 + 15894 1.05 0.00129
Target:  5'- gUGACGUGUCCAGGCGGAACAGCCAAUc -3'
miRNA:   3'- -ACUGCACAGGUCCGCCUUGUCGGUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.