miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11482 3' -60.2 NC_003085.1 + 46800 0.67 0.375534
Target:  5'- -gAUGaCGGUGGCCacguccuUGGgcggcaucaccuCGCCGCCGAg -3'
miRNA:   3'- cgUAC-GCCACCGGg------ACU------------GCGGUGGCU- -5'
11482 3' -60.2 NC_003085.1 + 19391 0.67 0.367022
Target:  5'- cGCGUGggcCGGUaccccagcaaGGCCCagggcGGCGCCACCu- -3'
miRNA:   3'- -CGUAC---GCCA----------CCGGGa----CUGCGGUGGcu -5'
11482 3' -60.2 NC_003085.1 + 20941 0.67 0.367022
Target:  5'- ---cGCGGauucGCCCUGACGguCCACCGc -3'
miRNA:   3'- cguaCGCCac--CGGGACUGC--GGUGGCu -5'
11482 3' -60.2 NC_003085.1 + 19424 0.68 0.34229
Target:  5'- uGCAacuUGUGcUGGCCCUGGaaGCCGCgGAc -3'
miRNA:   3'- -CGU---ACGCcACCGGGACUg-CGGUGgCU- -5'
11482 3' -60.2 NC_003085.1 + 29773 0.68 0.341487
Target:  5'- uCGUGCGcacUGGCCCUGGCGgcaugcuucucguCCACCc- -3'
miRNA:   3'- cGUACGCc--ACCGGGACUGC-------------GGUGGcu -5'
11482 3' -60.2 NC_003085.1 + 12567 0.68 0.334318
Target:  5'- aGCGUGCuGuUGGCCCaGGUGCUGCUGAu -3'
miRNA:   3'- -CGUACGcC-ACCGGGaCUGCGGUGGCU- -5'
11482 3' -60.2 NC_003085.1 + 18076 0.68 0.334318
Target:  5'- aCGUGCGGcUGGCCUcuuUGCgGCCGGg -3'
miRNA:   3'- cGUACGCC-ACCGGGacuGCGgUGGCU- -5'
11482 3' -60.2 NC_003085.1 + 1043 0.68 0.326483
Target:  5'- cCAUGCGGaggaaGCCa--GCGCCGCCGAg -3'
miRNA:   3'- cGUACGCCac---CGGgacUGCGGUGGCU- -5'
11482 3' -60.2 NC_003085.1 + 13811 0.68 0.318784
Target:  5'- uGCGUGgaGGUGGCgCCaugacgugcaGACGCCGCCc- -3'
miRNA:   3'- -CGUACg-CCACCG-GGa---------CUGCGGUGGcu -5'
11482 3' -60.2 NC_003085.1 + 3689 0.68 0.311223
Target:  5'- ---cGCGGcGaGUCCUGACGCCGcguCCGGu -3'
miRNA:   3'- cguaCGCCaC-CGGGACUGCGGU---GGCU- -5'
11482 3' -60.2 NC_003085.1 + 25786 0.68 0.311222
Target:  5'- aCGUGCaGGUGGg---GACGCCGCUGAa -3'
miRNA:   3'- cGUACG-CCACCgggaCUGCGGUGGCU- -5'
11482 3' -60.2 NC_003085.1 + 47782 0.69 0.296511
Target:  5'- uGCGUGCaGUGGUagagggUGACGUCGCCGc -3'
miRNA:   3'- -CGUACGcCACCGgg----ACUGCGGUGGCu -5'
11482 3' -60.2 NC_003085.1 + 30224 0.69 0.28936
Target:  5'- cCAUGCaaaUGGCCCUGGCGCagGCCu- -3'
miRNA:   3'- cGUACGcc-ACCGGGACUGCGg-UGGcu -5'
11482 3' -60.2 NC_003085.1 + 25303 0.69 0.275466
Target:  5'- gGCcgGCcaGGUGGacgacgCCgugGugGCCACCGAc -3'
miRNA:   3'- -CGuaCG--CCACCg-----GGa--CugCGGUGGCU- -5'
11482 3' -60.2 NC_003085.1 + 48513 0.69 0.268722
Target:  5'- gGCA-GCGGccugucUGGCaCCcgGACGCgGCCGAc -3'
miRNA:   3'- -CGUaCGCC------ACCG-GGa-CUGCGgUGGCU- -5'
11482 3' -60.2 NC_003085.1 + 33685 0.69 0.268721
Target:  5'- cGCAUGcCGGUcagacucccuuGGCCCUGGagUGCCcgucaACCGGa -3'
miRNA:   3'- -CGUAC-GCCA-----------CCGGGACU--GCGG-----UGGCU- -5'
11482 3' -60.2 NC_003085.1 + 15839 0.7 0.248659
Target:  5'- cGCcUGUGGUGGCCCaGACuucgaagGCCGuuGGc -3'
miRNA:   3'- -CGuACGCCACCGGGaCUG-------CGGUggCU- -5'
11482 3' -60.2 NC_003085.1 + 41921 0.7 0.248659
Target:  5'- gGCGUGUagcccgugcccacGGcaUGGCCCcacuUGcCGCCACCGAg -3'
miRNA:   3'- -CGUACG-------------CC--ACCGGG----ACuGCGGUGGCU- -5'
11482 3' -60.2 NC_003085.1 + 2303 0.71 0.21391
Target:  5'- aGCAcgGCGcUGGCCUgccuCGCCACCGGc -3'
miRNA:   3'- -CGUa-CGCcACCGGGacu-GCGGUGGCU- -5'
11482 3' -60.2 NC_003085.1 + 12757 0.71 0.197892
Target:  5'- uGCGUGUcgaGGUGGCCUggggUGAUGCCccuGCCGc -3'
miRNA:   3'- -CGUACG---CCACCGGG----ACUGCGG---UGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.