miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11484 5' -61.8 NC_003085.1 + 21488 0.66 0.342732
Target:  5'- cGGUGCCGAAGuacaacUUCCCGCcCCACa--- -3'
miRNA:   3'- -UCGCGGCUUCc-----GAGGGCG-GGUGacuu -5'
11484 5' -61.8 NC_003085.1 + 5936 0.66 0.334697
Target:  5'- cGCGCCGccuucGGCgccguUCCCGUCCACg--- -3'
miRNA:   3'- uCGCGGCuu---CCG-----AGGGCGGGUGacuu -5'
11484 5' -61.8 NC_003085.1 + 25635 0.66 0.334697
Target:  5'- uGgGCCG-AGGCUCUCGCUgACUu-- -3'
miRNA:   3'- uCgCGGCuUCCGAGGGCGGgUGAcuu -5'
11484 5' -61.8 NC_003085.1 + 5822 0.66 0.334697
Target:  5'- gGGCuGCUGGAGGCggauggccUCCCguGCCCGCUc-- -3'
miRNA:   3'- -UCG-CGGCUUCCG--------AGGG--CGGGUGAcuu -5'
11484 5' -61.8 NC_003085.1 + 44456 0.66 0.319044
Target:  5'- uGUGCUGAcacuugcgaGGGCUgCCGCCUcaguCUGAGu -3'
miRNA:   3'- uCGCGGCU---------UCCGAgGGCGGGu---GACUU- -5'
11484 5' -61.8 NC_003085.1 + 22791 0.66 0.319044
Target:  5'- cAGCGgcaaCGGccGCUCCCGCCCAg-GAGg -3'
miRNA:   3'- -UCGCg---GCUucCGAGGGCGGGUgaCUU- -5'
11484 5' -61.8 NC_003085.1 + 31538 0.66 0.303947
Target:  5'- gAGCGCCGcgcuGGGCgcaggcaCCCGUcuacgacgcaguCCACUGGGu -3'
miRNA:   3'- -UCGCGGCu---UCCGa------GGGCG------------GGUGACUU- -5'
11484 5' -61.8 NC_003085.1 + 1338 0.66 0.296607
Target:  5'- uGGCGCUGGAguacggacGGCUUCCGCCUggGCUc-- -3'
miRNA:   3'- -UCGCGGCUU--------CCGAGGGCGGG--UGAcuu -5'
11484 5' -61.8 NC_003085.1 + 2740 0.67 0.289405
Target:  5'- cGCGCgCGAAGGCgcugCCCaaggacUCCGCUGGc -3'
miRNA:   3'- uCGCG-GCUUCCGa---GGGc-----GGGUGACUu -5'
11484 5' -61.8 NC_003085.1 + 11549 0.67 0.282341
Target:  5'- gAGCGCCGggGccauGCgccaacgcaccgUCCUGCCCGCg--- -3'
miRNA:   3'- -UCGCGGCuuC----CG------------AGGGCGGGUGacuu -5'
11484 5' -61.8 NC_003085.1 + 1048 0.67 0.268625
Target:  5'- aGGCGCCGAAcug-CCCGCguggcuCCGCUGAAu -3'
miRNA:   3'- -UCGCGGCUUccgaGGGCG------GGUGACUU- -5'
11484 5' -61.8 NC_003085.1 + 43374 0.67 0.268625
Target:  5'- aGGCGaCGGAGGaCUCCCuggGgCCGCUGGu -3'
miRNA:   3'- -UCGCgGCUUCC-GAGGG---CgGGUGACUu -5'
11484 5' -61.8 NC_003085.1 + 39689 0.68 0.23669
Target:  5'- aGGCGCUGGAGGCUCgucucuCCGCCgu-UGAGg -3'
miRNA:   3'- -UCGCGGCUUCCGAG------GGCGGgugACUU- -5'
11484 5' -61.8 NC_003085.1 + 33134 0.68 0.23669
Target:  5'- uAGCGCCGcAGGCUCUCGaCCAgUa-- -3'
miRNA:   3'- -UCGCGGCuUCCGAGGGCgGGUgAcuu -5'
11484 5' -61.8 NC_003085.1 + 41824 0.68 0.224834
Target:  5'- cGGCGCCGcccAAGcGCcccaugagUCCCGCCCggcGCUGGu -3'
miRNA:   3'- -UCGCGGC---UUC-CG--------AGGGCGGG---UGACUu -5'
11484 5' -61.8 NC_003085.1 + 40738 0.69 0.207998
Target:  5'- cGGCGCCGGAGGCacuggaggugUCCUuggGCCUcgugugGCUGAc -3'
miRNA:   3'- -UCGCGGCUUCCG----------AGGG---CGGG------UGACUu -5'
11484 5' -61.8 NC_003085.1 + 27691 0.69 0.197388
Target:  5'- uGGUGCUGucgcgucuGGGCgUCCGCCCGCUGu- -3'
miRNA:   3'- -UCGCGGCu-------UCCGaGGGCGGGUGACuu -5'
11484 5' -61.8 NC_003085.1 + 43533 0.69 0.187254
Target:  5'- cGGCGCCGAAGGCggCgCGUCCAg---- -3'
miRNA:   3'- -UCGCGGCUUCCGa-GgGCGGGUgacuu -5'
11484 5' -61.8 NC_003085.1 + 3868 0.7 0.18236
Target:  5'- cGCGUCGAcGGCgcgCCCGCCguCUGu- -3'
miRNA:   3'- uCGCGGCUuCCGa--GGGCGGguGACuu -5'
11484 5' -61.8 NC_003085.1 + 45218 0.71 0.15118
Target:  5'- aAGCGCgCGAAGcGCUgCgGCCCgGCUGAc -3'
miRNA:   3'- -UCGCG-GCUUC-CGAgGgCGGG-UGACUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.