miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11485 3' -57.3 NC_003085.1 + 33212 0.66 0.558976
Target:  5'- -cGuuGG-CCGAGgcacuCGGCCGGGCUCc -3'
miRNA:   3'- cuCggCCaGGCUUac---GUCGGUCUGAG- -5'
11485 3' -57.3 NC_003085.1 + 1507 0.66 0.558976
Target:  5'- cGGCCGGUgCGccucAcgGCcGCCAGGCg- -3'
miRNA:   3'- cUCGGCCAgGC----UuaCGuCGGUCUGag -5'
11485 3' -57.3 NC_003085.1 + 22968 0.66 0.557889
Target:  5'- cGAGCCGGcCC-AGUcugccacccccaaGCAGCCAGAg-- -3'
miRNA:   3'- -CUCGGCCaGGcUUA-------------CGUCGGUCUgag -5'
11485 3' -57.3 NC_003085.1 + 45910 0.66 0.548136
Target:  5'- -cGCCGuGUgCGcccaGAgagGCAGCCAGAgUCg -3'
miRNA:   3'- cuCGGC-CAgGC----UUa--CGUCGGUCUgAG- -5'
11485 3' -57.3 NC_003085.1 + 21890 0.66 0.537362
Target:  5'- uGGCCgGGUCCG--UGCccuGCCAGAUg- -3'
miRNA:   3'- cUCGG-CCAGGCuuACGu--CGGUCUGag -5'
11485 3' -57.3 NC_003085.1 + 32902 0.66 0.526663
Target:  5'- gGGGCCGuccgccuucgacGUCgCGAAUGCGGCaCGGcgaccgGCUCa -3'
miRNA:   3'- -CUCGGC------------CAG-GCUUACGUCG-GUC------UGAG- -5'
11485 3' -57.3 NC_003085.1 + 18081 0.66 0.516045
Target:  5'- cGGCUGG-CCucuuUGCGGCCGGGgUCg -3'
miRNA:   3'- cUCGGCCaGGcuu-ACGUCGGUCUgAG- -5'
11485 3' -57.3 NC_003085.1 + 15034 0.67 0.505513
Target:  5'- -cGCCGGcUCCGAGUuuugGCuGGCCGGAaUCc -3'
miRNA:   3'- cuCGGCC-AGGCUUA----CG-UCGGUCUgAG- -5'
11485 3' -57.3 NC_003085.1 + 5208 0.68 0.444472
Target:  5'- aGGCCGaGUCCGAGcgcgacGCGGCCcGGCa- -3'
miRNA:   3'- cUCGGC-CAGGCUUa-----CGUCGGuCUGag -5'
11485 3' -57.3 NC_003085.1 + 36507 0.68 0.425055
Target:  5'- -uGCCGGggccuUCCGGAcGCGGCgCGGACg- -3'
miRNA:   3'- cuCGGCC-----AGGCUUaCGUCG-GUCUGag -5'
11485 3' -57.3 NC_003085.1 + 22121 0.69 0.352735
Target:  5'- aGAGcCCGGcgCCGca-GCAGCCGGACcCa -3'
miRNA:   3'- -CUC-GGCCa-GGCuuaCGUCGGUCUGaG- -5'
11485 3' -57.3 NC_003085.1 + 515 0.7 0.336069
Target:  5'- cGGGCCGGaCCGGAUGCGcGCUGccCUCg -3'
miRNA:   3'- -CUCGGCCaGGCUUACGU-CGGUcuGAG- -5'
11485 3' -57.3 NC_003085.1 + 942 0.7 0.327954
Target:  5'- cGGCCGcGUCCGggUGCcAGaCAGGC-Cg -3'
miRNA:   3'- cUCGGC-CAGGCuuACG-UCgGUCUGaG- -5'
11485 3' -57.3 NC_003085.1 + 27323 0.71 0.261465
Target:  5'- uGGGCCaccaccuuugGGUCCGGcUGCugcggcGCCGGGCUCu -3'
miRNA:   3'- -CUCGG----------CCAGGCUuACGu-----CGGUCUGAG- -5'
11485 3' -57.3 NC_003085.1 + 41081 0.72 0.241876
Target:  5'- aGAGUCGGUCCGGAUucCGGCU-GGCUCc -3'
miRNA:   3'- -CUCGGCCAGGCUUAc-GUCGGuCUGAG- -5'
11485 3' -57.3 NC_003085.1 + 40825 0.73 0.195579
Target:  5'- cGGCCGGccuguacCUGAcgGCGGCCGGGCUg -3'
miRNA:   3'- cUCGGCCa------GGCUuaCGUCGGUCUGAg -5'
11485 3' -57.3 NC_003085.1 + 44935 0.75 0.148749
Target:  5'- -cGCCG--CCG-AUGCAGCCGGGCUCa -3'
miRNA:   3'- cuCGGCcaGGCuUACGUCGGUCUGAG- -5'
11485 3' -57.3 NC_003085.1 + 14216 1.1 0.000402
Target:  5'- aGAGCCGGUCCGAAUGCAGCCAGACUCa -3'
miRNA:   3'- -CUCGGCCAGGCUUACGUCGGUCUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.