Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11486 | 3' | -54.2 | NC_003085.1 | + | 39664 | 0.66 | 0.709946 |
Target: 5'- gAGcgGCG-CGCGCgugagcagcagcaGGCGcUGGAGGCu -3' miRNA: 3'- -UCuaCGUaGCGCGg------------CUGUaACCUCCG- -5' |
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11486 | 3' | -54.2 | NC_003085.1 | + | 23002 | 0.68 | 0.625354 |
Target: 5'- gAGGUGCG-CGCGCCG-CAguccuGGCg -3' miRNA: 3'- -UCUACGUaGCGCGGCuGUaaccuCCG- -5' |
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11486 | 3' | -54.2 | NC_003085.1 | + | 32026 | 0.68 | 0.636567 |
Target: 5'- -cGUGCGUaccgGCGCgGugA-UGGGGGCg -3' miRNA: 3'- ucUACGUAg---CGCGgCugUaACCUCCG- -5' |
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11486 | 3' | -54.2 | NC_003085.1 | + | 38069 | 0.67 | 0.647774 |
Target: 5'- uGGUGCGUCGCGgagaCGGCAgcGcAGGUg -3' miRNA: 3'- uCUACGUAGCGCg---GCUGUaaCcUCCG- -5' |
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11486 | 3' | -54.2 | NC_003085.1 | + | 10636 | 0.67 | 0.658967 |
Target: 5'- -uGUGUGggGCGCCGGCA---GAGGCa -3' miRNA: 3'- ucUACGUagCGCGGCUGUaacCUCCG- -5' |
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11486 | 3' | -54.2 | NC_003085.1 | + | 38123 | 0.67 | 0.658967 |
Target: 5'- gAGGUGCcgugaggcUCGCcgcccuGCUGGCGUUGGuGGUg -3' miRNA: 3'- -UCUACGu-------AGCG------CGGCUGUAACCuCCG- -5' |
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11486 | 3' | -54.2 | NC_003085.1 | + | 19001 | 0.67 | 0.670134 |
Target: 5'- cGGUGCAUCGUcggGCC--CGUUGGuagcGGCa -3' miRNA: 3'- uCUACGUAGCG---CGGcuGUAACCu---CCG- -5' |
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11486 | 3' | -54.2 | NC_003085.1 | + | 18301 | 0.66 | 0.703367 |
Target: 5'- cGGUGCA-CGCcCCGGCGcUGGccguccgaaGGGCa -3' miRNA: 3'- uCUACGUaGCGcGGCUGUaACC---------UCCG- -5' |
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11486 | 3' | -54.2 | NC_003085.1 | + | 33188 | 0.66 | 0.703367 |
Target: 5'- aGGA-GCGgagaUUGCGCCagaaGGCGUUGGccgAGGCa -3' miRNA: 3'- -UCUaCGU----AGCGCGG----CUGUAACC---UCCG- -5' |
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11486 | 3' | -54.2 | NC_003085.1 | + | 5074 | 0.68 | 0.61079 |
Target: 5'- ---gGCAUCGUggucgcgucaagaaGUCGGaGUUGGAGGCg -3' miRNA: 3'- ucuaCGUAGCG--------------CGGCUgUAACCUCCG- -5' |
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11486 | 3' | -54.2 | NC_003085.1 | + | 3697 | 0.68 | 0.591796 |
Target: 5'- gGGAUGCGgccaCGCaGCgCGACGUgccacGcGAGGCg -3' miRNA: 3'- -UCUACGUa---GCG-CG-GCUGUAa----C-CUCCG- -5' |
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11486 | 3' | -54.2 | NC_003085.1 | + | 13567 | 0.68 | 0.591796 |
Target: 5'- cGAgcaagGCG-CGCGUgGACGUgggcaccGGAGGCg -3' miRNA: 3'- uCUa----CGUaGCGCGgCUGUAa------CCUCCG- -5' |
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11486 | 3' | -54.2 | NC_003085.1 | + | 7464 | 0.75 | 0.258496 |
Target: 5'- cGGuggGCGUCGCGCCucACGcUGGAGGUg -3' miRNA: 3'- -UCua-CGUAGCGCGGc-UGUaACCUCCG- -5' |
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11486 | 3' | -54.2 | NC_003085.1 | + | 31447 | 0.74 | 0.301686 |
Target: 5'- cGGAUgGCAcguacggccUCGCGCCGuCGgacaGGAGGCa -3' miRNA: 3'- -UCUA-CGU---------AGCGCGGCuGUaa--CCUCCG- -5' |
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11486 | 3' | -54.2 | NC_003085.1 | + | 361 | 0.73 | 0.317271 |
Target: 5'- gGGAUGa---GCGCCGACAacgGGAGGg -3' miRNA: 3'- -UCUACguagCGCGGCUGUaa-CCUCCg -5' |
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11486 | 3' | -54.2 | NC_003085.1 | + | 40707 | 0.72 | 0.380112 |
Target: 5'- cGGGUGCuggaCGCGCCGguggaccucucgccgGCGccGGAGGCa -3' miRNA: 3'- -UCUACGua--GCGCGGC---------------UGUaaCCUCCG- -5' |
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11486 | 3' | -54.2 | NC_003085.1 | + | 11650 | 0.71 | 0.413555 |
Target: 5'- cGGAggGCAUUGCGCCGggugGCcgaGGAGGUg -3' miRNA: 3'- -UCUa-CGUAGCGCGGC----UGuaaCCUCCG- -5' |
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11486 | 3' | -54.2 | NC_003085.1 | + | 32847 | 0.71 | 0.442768 |
Target: 5'- gAGAgGCcgCGCGCCG-CGggaccgcccgGGAGGCc -3' miRNA: 3'- -UCUaCGuaGCGCGGCuGUaa--------CCUCCG- -5' |
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11486 | 3' | -54.2 | NC_003085.1 | + | 24623 | 0.69 | 0.535595 |
Target: 5'- cAGGUGCugcaGCGCuucaccuCGGCGgaGGAGGCg -3' miRNA: 3'- -UCUACGuag-CGCG-------GCUGUaaCCUCCG- -5' |
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11486 | 3' | -54.2 | NC_003085.1 | + | 43427 | 0.69 | 0.558552 |
Target: 5'- cAGA-GCGUCGCGUCGuCGUgaGGGGuGCc -3' miRNA: 3'- -UCUaCGUAGCGCGGCuGUAa-CCUC-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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