miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11486 3' -54.2 NC_003085.1 + 24623 0.69 0.535595
Target:  5'- cAGGUGCugcaGCGCuucaccuCGGCGgaGGAGGCg -3'
miRNA:   3'- -UCUACGuag-CGCG-------GCUGUaaCCUCCG- -5'
11486 3' -54.2 NC_003085.1 + 28003 0.66 0.73595
Target:  5'- cGGAcGCGUCuGCGUcaaCGACGgcuacgUGGAcGGCg -3'
miRNA:   3'- -UCUaCGUAG-CGCG---GCUGUa-----ACCU-CCG- -5'
11486 3' -54.2 NC_003085.1 + 31447 0.74 0.301686
Target:  5'- cGGAUgGCAcguacggccUCGCGCCGuCGgacaGGAGGCa -3'
miRNA:   3'- -UCUA-CGU---------AGCGCGGCuGUaa--CCUCCG- -5'
11486 3' -54.2 NC_003085.1 + 32026 0.68 0.636567
Target:  5'- -cGUGCGUaccgGCGCgGugA-UGGGGGCg -3'
miRNA:   3'- ucUACGUAg---CGCGgCugUaACCUCCG- -5'
11486 3' -54.2 NC_003085.1 + 32847 0.71 0.442768
Target:  5'- gAGAgGCcgCGCGCCG-CGggaccgcccgGGAGGCc -3'
miRNA:   3'- -UCUaCGuaGCGCGGCuGUaa--------CCUCCG- -5'
11486 3' -54.2 NC_003085.1 + 33074 0.66 0.725181
Target:  5'- --cUGCAUCGC-CagGACGUgcccgcGGAGGCu -3'
miRNA:   3'- ucuACGUAGCGcGg-CUGUAa-----CCUCCG- -5'
11486 3' -54.2 NC_003085.1 + 33179 0.7 0.512977
Target:  5'- --cUGCuccaguaGUCGCGCCaguagcgGGCGUccUGGAGGCg -3'
miRNA:   3'- ucuACG-------UAGCGCGG-------CUGUA--ACCUCCG- -5'
11486 3' -54.2 NC_003085.1 + 33188 0.66 0.703367
Target:  5'- aGGA-GCGgagaUUGCGCCagaaGGCGUUGGccgAGGCa -3'
miRNA:   3'- -UCUaCGU----AGCGCGG----CUGUAACC---UCCG- -5'
11486 3' -54.2 NC_003085.1 + 34741 0.66 0.725181
Target:  5'- cGAUgGCAUCGCGCgGAgGUgacGGGUg -3'
miRNA:   3'- uCUA-CGUAGCGCGgCUgUAaccUCCG- -5'
11486 3' -54.2 NC_003085.1 + 38069 0.67 0.647774
Target:  5'- uGGUGCGUCGCGgagaCGGCAgcGcAGGUg -3'
miRNA:   3'- uCUACGUAGCGCg---GCUGUaaCcUCCG- -5'
11486 3' -54.2 NC_003085.1 + 38123 0.67 0.658967
Target:  5'- gAGGUGCcgugaggcUCGCcgcccuGCUGGCGUUGGuGGUg -3'
miRNA:   3'- -UCUACGu-------AGCG------CGGCUGUAACCuCCG- -5'
11486 3' -54.2 NC_003085.1 + 38395 0.67 0.681265
Target:  5'- cGGUGCAg---GCCGAgGUUGGuGGUg -3'
miRNA:   3'- uCUACGUagcgCGGCUgUAACCuCCG- -5'
11486 3' -54.2 NC_003085.1 + 39664 0.66 0.709946
Target:  5'- gAGcgGCG-CGCGCgugagcagcagcaGGCGcUGGAGGCu -3'
miRNA:   3'- -UCuaCGUaGCGCGg------------CUGUaACCUCCG- -5'
11486 3' -54.2 NC_003085.1 + 40306 0.66 0.746611
Target:  5'- ---aGCGUCGCccucuaccucGCCGGCAagGGcuGGCg -3'
miRNA:   3'- ucuaCGUAGCG----------CGGCUGUaaCCu-CCG- -5'
11486 3' -54.2 NC_003085.1 + 40707 0.72 0.380112
Target:  5'- cGGGUGCuggaCGCGCCGguggaccucucgccgGCGccGGAGGCa -3'
miRNA:   3'- -UCUACGua--GCGCGGC---------------UGUaaCCUCCG- -5'
11486 3' -54.2 NC_003085.1 + 43427 0.69 0.558552
Target:  5'- cAGA-GCGUCGCGUCGuCGUgaGGGGuGCc -3'
miRNA:   3'- -UCUaCGUAGCGCGGCuGUAa-CCUC-CG- -5'
11486 3' -54.2 NC_003085.1 + 44205 0.66 0.73595
Target:  5'- ---cGCAcccaccaCGCGCCacccauucGCGUUGGAGGCc -3'
miRNA:   3'- ucuaCGUa------GCGCGGc-------UGUAACCUCCG- -5'
11486 3' -54.2 NC_003085.1 + 44923 0.66 0.746611
Target:  5'- cGGGUGUAUCaaGaCCG-CAcgGGAGGUa -3'
miRNA:   3'- -UCUACGUAGcgC-GGCuGUaaCCUCCG- -5'
11486 3' -54.2 NC_003085.1 + 45601 0.66 0.73595
Target:  5'- cGGgcGCGccgucgaCGCGCCGugGUccUGGAugGGCa -3'
miRNA:   3'- -UCuaCGUa------GCGCGGCugUA--ACCU--CCG- -5'
11486 3' -54.2 NC_003085.1 + 49297 0.86 0.049775
Target:  5'- --cUGCGUCGCGUCGGCGUcccgGGAGGCg -3'
miRNA:   3'- ucuACGUAGCGCGGCUGUAa---CCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.