miRNA display CGI


Results 21 - 31 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11486 5' -56.3 NC_003085.1 + 22480 0.66 0.596345
Target:  5'- -cGCGguagcCCAGC--CGGCUGCGCAGGc -3'
miRNA:   3'- acUGCa----GGUUGcaGCCGACGCGUCUc -5'
11486 5' -56.3 NC_003085.1 + 19316 0.77 0.147673
Target:  5'- gUGACGUCCuGCGUgGGCUGCuggggccggcgGCGGAu -3'
miRNA:   3'- -ACUGCAGGuUGCAgCCGACG-----------CGUCUc -5'
11486 5' -56.3 NC_003085.1 + 14361 0.72 0.293918
Target:  5'- gGACagaagCCAGCGgcuGGCUGCGCGGAu -3'
miRNA:   3'- aCUGca---GGUUGCag-CCGACGCGUCUc -5'
11486 5' -56.3 NC_003085.1 + 14057 1.08 0.000822
Target:  5'- aUGACGUCCAACGUCGGCUGCGCAGAGc -3'
miRNA:   3'- -ACUGCAGGUUGCAGCCGACGCGUCUC- -5'
11486 5' -56.3 NC_003085.1 + 11996 0.68 0.528222
Target:  5'- cGGCGU-CAGCGUguucgugaaugcggUGGCggGCGCGGGGu -3'
miRNA:   3'- aCUGCAgGUUGCA--------------GCCGa-CGCGUCUC- -5'
11486 5' -56.3 NC_003085.1 + 11603 0.67 0.563629
Target:  5'- cGACGUCUGGC--CGGCcaGCGCAGGc -3'
miRNA:   3'- aCUGCAGGUUGcaGCCGa-CGCGUCUc -5'
11486 5' -56.3 NC_003085.1 + 9974 0.68 0.504037
Target:  5'- cGGCuUCCGagcgccucgacgcgcACGUCGGCaggGgGCGGAGg -3'
miRNA:   3'- aCUGcAGGU---------------UGCAGCCGa--CgCGUCUC- -5'
11486 5' -56.3 NC_003085.1 + 9669 0.66 0.62713
Target:  5'- gGACGgccgCCAACGUcgagcacCGGCUGgcgucccUGCAGAc -3'
miRNA:   3'- aCUGCa---GGUUGCA-------GCCGAC-------GCGUCUc -5'
11486 5' -56.3 NC_003085.1 + 7496 0.68 0.49988
Target:  5'- gGGCGUCC-GCGUCGaGCgGuUGCAGGa -3'
miRNA:   3'- aCUGCAGGuUGCAGC-CGaC-GCGUCUc -5'
11486 5' -56.3 NC_003085.1 + 2513 0.68 0.49988
Target:  5'- gGACGgugugCCcGCGUCGGCcccUGCGCGc-- -3'
miRNA:   3'- aCUGCa----GGuUGCAGCCG---ACGCGUcuc -5'
11486 5' -56.3 NC_003085.1 + 1535 0.71 0.3245
Target:  5'- gUGAC-UCCAGCGUCuGCUGuCGC-GAGg -3'
miRNA:   3'- -ACUGcAGGUUGCAGcCGAC-GCGuCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.