miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11488 5' -56.2 NC_003085.1 + 33989 0.66 0.692082
Target:  5'- gGCACcccuGCGccGCGUcUGggUuCGCGGCGa -3'
miRNA:   3'- -CGUG----CGCcaCGCAuGCuuA-GCGCCGC- -5'
11488 5' -56.2 NC_003085.1 + 42558 0.66 0.692082
Target:  5'- aGCGCGCGG-GCGaggGCuGAcgCGaUGGCc -3'
miRNA:   3'- -CGUGCGCCaCGCa--UG-CUuaGC-GCCGc -5'
11488 5' -56.2 NC_003085.1 + 8682 0.66 0.681317
Target:  5'- cGCGCGCGacGCGUGCGcgcacuUCG-GGUGg -3'
miRNA:   3'- -CGUGCGCcaCGCAUGCuu----AGCgCCGC- -5'
11488 5' -56.2 NC_003085.1 + 20088 0.66 0.681317
Target:  5'- cGCGCGCuGUGaCGUGCcgcagGUGGCGg -3'
miRNA:   3'- -CGUGCGcCAC-GCAUGcuuagCGCCGC- -5'
11488 5' -56.2 NC_003085.1 + 38061 0.66 0.670507
Target:  5'- aCAUGUGGUG-GUGCG--UCGCGGa- -3'
miRNA:   3'- cGUGCGCCACgCAUGCuuAGCGCCgc -5'
11488 5' -56.2 NC_003085.1 + 5589 0.66 0.670507
Target:  5'- cUACGCccuGGUGCGgACGAugcugagugaCGCGGUGg -3'
miRNA:   3'- cGUGCG---CCACGCaUGCUua--------GCGCCGC- -5'
11488 5' -56.2 NC_003085.1 + 5265 0.66 0.659661
Target:  5'- gGCGCGUGGUGgGUGCG---CGaCGGg- -3'
miRNA:   3'- -CGUGCGCCACgCAUGCuuaGC-GCCgc -5'
11488 5' -56.2 NC_003085.1 + 38842 0.66 0.659661
Target:  5'- uGC-CGCGucgucccacUGCG-ACGGcgCGCGGCGa -3'
miRNA:   3'- -CGuGCGCc--------ACGCaUGCUuaGCGCCGC- -5'
11488 5' -56.2 NC_003085.1 + 34554 0.66 0.648791
Target:  5'- cGCugGCGGccgGUGCGcaacuccucAAUgGCGGCGa -3'
miRNA:   3'- -CGugCGCCacgCAUGC---------UUAgCGCCGC- -5'
11488 5' -56.2 NC_003085.1 + 30350 0.66 0.637905
Target:  5'- gGUACGUGuUGCGgaugacaGCGAAgcgggUGCGGCGc -3'
miRNA:   3'- -CGUGCGCcACGCa------UGCUUa----GCGCCGC- -5'
11488 5' -56.2 NC_003085.1 + 25507 0.66 0.637905
Target:  5'- -uGCGUGGUcucGCGgAUGAGUCGCugaugcagauGGCGg -3'
miRNA:   3'- cgUGCGCCA---CGCaUGCUUAGCG----------CCGC- -5'
11488 5' -56.2 NC_003085.1 + 48763 0.66 0.637905
Target:  5'- cCACGCGGaguUGCcccgugGCGAcUgGCGGCGc -3'
miRNA:   3'- cGUGCGCC---ACGca----UGCUuAgCGCCGC- -5'
11488 5' -56.2 NC_003085.1 + 28315 0.66 0.637905
Target:  5'- gGUGCGCGGUGgG-ACGGG-CGUGGg- -3'
miRNA:   3'- -CGUGCGCCACgCaUGCUUaGCGCCgc -5'
11488 5' -56.2 NC_003085.1 + 3667 0.67 0.627014
Target:  5'- gGCACGacgaGGUugaccucgaguuGCGUugGGAU-GCGGCc -3'
miRNA:   3'- -CGUGCg---CCA------------CGCAugCUUAgCGCCGc -5'
11488 5' -56.2 NC_003085.1 + 20948 0.67 0.627014
Target:  5'- cGCGCGCGucUGC--ACGAggUGCGGUGg -3'
miRNA:   3'- -CGUGCGCc-ACGcaUGCUuaGCGCCGC- -5'
11488 5' -56.2 NC_003085.1 + 39114 0.67 0.605255
Target:  5'- aGCGucCGCGGUGCcucccgggagGCGA--CGUGGCGg -3'
miRNA:   3'- -CGU--GCGCCACGca--------UGCUuaGCGCCGC- -5'
11488 5' -56.2 NC_003085.1 + 3400 0.67 0.605255
Target:  5'- -aGCGCGacGCGUACGugaaagcguAUCGCGcGCGg -3'
miRNA:   3'- cgUGCGCcaCGCAUGCu--------UAGCGC-CGC- -5'
11488 5' -56.2 NC_003085.1 + 37301 0.67 0.605255
Target:  5'- cGCACcuGCGGUGCGcaGCGggUacaCGgGGUa -3'
miRNA:   3'- -CGUG--CGCCACGCa-UGCuuA---GCgCCGc -5'
11488 5' -56.2 NC_003085.1 + 7506 0.67 0.594405
Target:  5'- -aGCGCaGGUGCGUcuCG-GUgGCGGCa -3'
miRNA:   3'- cgUGCG-CCACGCAu-GCuUAgCGCCGc -5'
11488 5' -56.2 NC_003085.1 + 32234 0.67 0.594405
Target:  5'- aGCACGgGGcgccGCGUGCucaccaGCGGCGc -3'
miRNA:   3'- -CGUGCgCCa---CGCAUGcuuag-CGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.