miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11489 3' -59 NC_003085.1 + 45598 0.66 0.474297
Target:  5'- cGGCGGGCgcgccGUCGacgCGCCGUgGUc-- -3'
miRNA:   3'- -CCGCCCGa----CAGUca-GCGGCAgCGaua -5'
11489 3' -59 NC_003085.1 + 12022 0.66 0.45454
Target:  5'- uGGCGGGCgcggGGUUGgCGcUCGCUAg -3'
miRNA:   3'- -CCGCCCGacagUCAGCgGC-AGCGAUa -5'
11489 3' -59 NC_003085.1 + 36146 0.66 0.443865
Target:  5'- uGGCGGGCucgcugaUGaUGGUCGCCGacCGCUc- -3'
miRNA:   3'- -CCGCCCG-------ACaGUCAGCGGCa-GCGAua -5'
11489 3' -59 NC_003085.1 + 25383 0.67 0.435237
Target:  5'- cGGCGGGCU-UCAccGUCGUCcagauGUCGCg-- -3'
miRNA:   3'- -CCGCCCGAcAGU--CAGCGG-----CAGCGaua -5'
11489 3' -59 NC_003085.1 + 16525 0.67 0.416417
Target:  5'- aGGCGcGcCUGUugagcCGGUCGCCGUUGCc-- -3'
miRNA:   3'- -CCGCcC-GACA-----GUCAGCGGCAGCGaua -5'
11489 3' -59 NC_003085.1 + 26508 0.67 0.389141
Target:  5'- gGGCcGGCUcGUcCGGcuUCGCCGUCGCc-- -3'
miRNA:   3'- -CCGcCCGA-CA-GUC--AGCGGCAGCGaua -5'
11489 3' -59 NC_003085.1 + 40493 0.68 0.380313
Target:  5'- uGGCGGGC-GUC-GUCgaGCCGgagcCGCUGa -3'
miRNA:   3'- -CCGCCCGaCAGuCAG--CGGCa---GCGAUa -5'
11489 3' -59 NC_003085.1 + 30329 0.68 0.363063
Target:  5'- aGCGGGCccUGgCGGaCGCUGUCGCg-- -3'
miRNA:   3'- cCGCCCG--ACaGUCaGCGGCAGCGaua -5'
11489 3' -59 NC_003085.1 + 4833 0.7 0.285163
Target:  5'- aGUGGGgUGUCAGUCuGCCGU-GUUAc -3'
miRNA:   3'- cCGCCCgACAGUCAG-CGGCAgCGAUa -5'
11489 3' -59 NC_003085.1 + 32994 0.7 0.271261
Target:  5'- aGGCGGcGCgcagGUCGGacacUGCCGUCGCc-- -3'
miRNA:   3'- -CCGCC-CGa---CAGUCa---GCGGCAGCGaua -5'
11489 3' -59 NC_003085.1 + 25260 0.71 0.251437
Target:  5'- cGGCGGGC-GUC-GUCGUCGgCGCg-- -3'
miRNA:   3'- -CCGCCCGaCAGuCAGCGGCaGCGaua -5'
11489 3' -59 NC_003085.1 + 1936 0.71 0.2451
Target:  5'- cGCGGGCUcGUCGGUCccggugGCCGuaUCGCa-- -3'
miRNA:   3'- cCGCCCGA-CAGUCAG------CGGC--AGCGaua -5'
11489 3' -59 NC_003085.1 + 12930 1.08 0.000449
Target:  5'- uGGCGGGCUGUCAGUCGCCGUCGCUAUa -3'
miRNA:   3'- -CCGCCCGACAGUCAGCGGCAGCGAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.