miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11490 3' -53.6 NC_003085.1 + 32120 0.77 0.19649
Target:  5'- aCGGCACUCGgugGuGCgacgGGGGCGGCUGg -3'
miRNA:   3'- -GUCGUGAGCa--CuUGa---CCUCGCUGACg -5'
11490 3' -53.6 NC_003085.1 + 1327 0.66 0.767656
Target:  5'- uGGCACUgCGaUGGcGCUGGAGUacgGACgGCu -3'
miRNA:   3'- gUCGUGA-GC-ACU-UGACCUCG---CUGaCG- -5'
11490 3' -53.6 NC_003085.1 + 32034 0.66 0.735912
Target:  5'- cCGGCGCg-GUGAug-GGGGCGGCgagugGCc -3'
miRNA:   3'- -GUCGUGagCACUugaCCUCGCUGa----CG- -5'
11490 3' -53.6 NC_003085.1 + 11312 0.66 0.735912
Target:  5'- uGGCGCUUGUGGAC--GAG-GACUGg -3'
miRNA:   3'- gUCGUGAGCACUUGacCUCgCUGACg -5'
11490 3' -53.6 NC_003085.1 + 40976 0.67 0.725096
Target:  5'- cCAGCGCUCGcaagcggcaaGGGCUGGcccAGCGGCg-- -3'
miRNA:   3'- -GUCGUGAGCa---------CUUGACC---UCGCUGacg -5'
11490 3' -53.6 NC_003085.1 + 186 0.67 0.703185
Target:  5'- gCAGCAuCUCG-GAG-UGGAcGCGGCgcgGCg -3'
miRNA:   3'- -GUCGU-GAGCaCUUgACCU-CGCUGa--CG- -5'
11490 3' -53.6 NC_003085.1 + 8330 0.67 0.680984
Target:  5'- gGGCACUUccucaucGGGCgcgUGGAGCGGCUGg -3'
miRNA:   3'- gUCGUGAGca-----CUUG---ACCUCGCUGACg -5'
11490 3' -53.6 NC_003085.1 + 6658 0.68 0.666443
Target:  5'- uGGCgucccaACUCGUGGacGCcucccugauggcccUGGAGCGGCUuGCg -3'
miRNA:   3'- gUCG------UGAGCACU--UG--------------ACCUCGCUGA-CG- -5'
11490 3' -53.6 NC_003085.1 + 18084 0.68 0.636089
Target:  5'- gCGGCAgUgGgaguUGGcCUGGaAGCGGCUGCg -3'
miRNA:   3'- -GUCGUgAgC----ACUuGACC-UCGCUGACG- -5'
11490 3' -53.6 NC_003085.1 + 4566 0.69 0.587771
Target:  5'- -cGgACUCGUGGACUgcaauugcaaucaaGGuuGCGAUUGCg -3'
miRNA:   3'- guCgUGAGCACUUGA--------------CCu-CGCUGACG- -5'
11490 3' -53.6 NC_003085.1 + 2226 0.75 0.270846
Target:  5'- uGGCGCUCGUGGaaccGCUGGuGCGcaaugcCUGCc -3'
miRNA:   3'- gUCGUGAGCACU----UGACCuCGCu-----GACG- -5'
11490 3' -53.6 NC_003085.1 + 20666 0.75 0.27797
Target:  5'- -cGCG-UCG-GAguuGCUGGAGCGGCUGCu -3'
miRNA:   3'- guCGUgAGCaCU---UGACCUCGCUGACG- -5'
11490 3' -53.6 NC_003085.1 + 4118 0.74 0.32711
Target:  5'- gGGCGCcgCGcugGGACUccagcgccgcucuacGGAGCGACUGCu -3'
miRNA:   3'- gUCGUGa-GCa--CUUGA---------------CCUCGCUGACG- -5'
11490 3' -53.6 NC_003085.1 + 42718 0.73 0.384223
Target:  5'- gCGGCACcucaggCGUGGGCgucGGGGCGAUgcggGCg -3'
miRNA:   3'- -GUCGUGa-----GCACUUGa--CCUCGCUGa---CG- -5'
11490 3' -53.6 NC_003085.1 + 7390 0.71 0.472003
Target:  5'- aCGGCGCccgCGUGAACUGGcacgAGUccGACUGg -3'
miRNA:   3'- -GUCGUGa--GCACUUGACC----UCG--CUGACg -5'
11490 3' -53.6 NC_003085.1 + 47924 0.69 0.55775
Target:  5'- -cGCACUCaGUGAcgagucGCUGGuacuCGGCUGCc -3'
miRNA:   3'- guCGUGAG-CACU------UGACCuc--GCUGACG- -5'
11490 3' -53.6 NC_003085.1 + 39032 0.69 0.568825
Target:  5'- aCGGCAUgCGUGGGC--GAGCG-CUGCg -3'
miRNA:   3'- -GUCGUGaGCACUUGacCUCGCuGACG- -5'
11490 3' -53.6 NC_003085.1 + 12360 1.13 0.000693
Target:  5'- cCAGCACUCGUGAACUGGAGCGACUGCg -3'
miRNA:   3'- -GUCGUGAGCACUUGACCUCGCUGACG- -5'
11490 3' -53.6 NC_003085.1 + 5858 0.68 0.658588
Target:  5'- -uGCACUCG-GGA-UGGcAGCGcCUGCg -3'
miRNA:   3'- guCGUGAGCaCUUgACC-UCGCuGACG- -5'
11490 3' -53.6 NC_003085.1 + 15176 0.68 0.624829
Target:  5'- -cGaCGCUCGgcgGAACacaaGGGCGGCUGCu -3'
miRNA:   3'- guC-GUGAGCa--CUUGac--CUCGCUGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.