miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11490 5' -59 NC_003085.1 + 46443 0.68 0.397208
Target:  5'- gUGCAccgUCUGgGCGUCGUCcGuGCGCcCAGc -3'
miRNA:   3'- gACGU---AGGCgUGCAGCAG-C-CGCG-GUC- -5'
11490 5' -59 NC_003085.1 + 14957 0.68 0.397208
Target:  5'- gCUGUcgCCGCACGgucCGU-GGUGCCc- -3'
miRNA:   3'- -GACGuaGGCGUGCa--GCAgCCGCGGuc -5'
11490 5' -59 NC_003085.1 + 20603 0.68 0.397208
Target:  5'- -gGCAgcgCCGCGgaaGUCGggCGGCGCgGGu -3'
miRNA:   3'- gaCGUa--GGCGUg--CAGCa-GCCGCGgUC- -5'
11490 5' -59 NC_003085.1 + 3847 0.68 0.397208
Target:  5'- aCUGCccAUCCaggaccacgGCGCGUCGaCGGCGCg-- -3'
miRNA:   3'- -GACG--UAGG---------CGUGCAGCaGCCGCGguc -5'
11490 5' -59 NC_003085.1 + 10608 0.68 0.379566
Target:  5'- gCUGUcgCCGCGCGcCGUCGcagugggacgacGCGgCAGu -3'
miRNA:   3'- -GACGuaGGCGUGCaGCAGC------------CGCgGUC- -5'
11490 5' -59 NC_003085.1 + 937 0.68 0.370944
Target:  5'- -aGCGUCgGC-CG-CGUCcgGGUGCCAGa -3'
miRNA:   3'- gaCGUAGgCGuGCaGCAG--CCGCGGUC- -5'
11490 5' -59 NC_003085.1 + 8584 0.68 0.370944
Target:  5'- -gGCAUgCCGC-CGUCGUCcGaGCGCguGg -3'
miRNA:   3'- gaCGUA-GGCGuGCAGCAG-C-CGCGguC- -5'
11490 5' -59 NC_003085.1 + 20770 0.68 0.370944
Target:  5'- -cGCAgcUCCGCGCGUUGUCcGCGgggaugaugcCCAGu -3'
miRNA:   3'- gaCGU--AGGCGUGCAGCAGcCGC----------GGUC- -5'
11490 5' -59 NC_003085.1 + 48735 0.68 0.354105
Target:  5'- -cGCcuGUCCGUgaGCGgcgCGUCaGGCGCCAc -3'
miRNA:   3'- gaCG--UAGGCG--UGCa--GCAG-CCGCGGUc -5'
11490 5' -59 NC_003085.1 + 42017 0.68 0.354105
Target:  5'- -gGCGUCgGCACGgaCGagGGCGCCu- -3'
miRNA:   3'- gaCGUAGgCGUGCa-GCagCCGCGGuc -5'
11490 5' -59 NC_003085.1 + 40952 0.69 0.34589
Target:  5'- cCUGCGcCCGCuggugcGCGUCGUacUGGCggGCCAGc -3'
miRNA:   3'- -GACGUaGGCG------UGCAGCA--GCCG--CGGUC- -5'
11490 5' -59 NC_003085.1 + 2097 0.69 0.337813
Target:  5'- -aGCcgCCGCACcUCGgcgccaUCGGCGCCc- -3'
miRNA:   3'- gaCGuaGGCGUGcAGC------AGCCGCGGuc -5'
11490 5' -59 NC_003085.1 + 16479 0.69 0.329874
Target:  5'- cCUGCGcgCCGCcuuccCGUCGcugaCGGCGCCGa -3'
miRNA:   3'- -GACGUa-GGCGu----GCAGCa---GCCGCGGUc -5'
11490 5' -59 NC_003085.1 + 10078 0.69 0.329874
Target:  5'- uUGCuUCCGCAUGagccccCGcCGGCGUCGGa -3'
miRNA:   3'- gACGuAGGCGUGCa-----GCaGCCGCGGUC- -5'
11490 5' -59 NC_003085.1 + 29534 0.69 0.329874
Target:  5'- -aGCGUCUugGCGCGggCGUCGuGCGgCAGg -3'
miRNA:   3'- gaCGUAGG--CGUGCa-GCAGC-CGCgGUC- -5'
11490 5' -59 NC_003085.1 + 28612 0.69 0.322073
Target:  5'- -gGCA-CCGCAgCGgCGagcUCGGCGCCGGu -3'
miRNA:   3'- gaCGUaGGCGU-GCaGC---AGCCGCGGUC- -5'
11490 5' -59 NC_003085.1 + 44886 0.69 0.321301
Target:  5'- -cGCAUCCGCACGucugcuUCGUCuccucauGGCGUCc- -3'
miRNA:   3'- gaCGUAGGCGUGC------AGCAG-------CCGCGGuc -5'
11490 5' -59 NC_003085.1 + 25265 0.69 0.314411
Target:  5'- aCUGCuUCaGCGCGUacUCGGCGCUGGa -3'
miRNA:   3'- -GACGuAGgCGUGCAgcAGCCGCGGUC- -5'
11490 5' -59 NC_003085.1 + 9163 0.69 0.314411
Target:  5'- -cGCcgCCGCGCaGUCcugagucuguggGUCGGCGCgGGu -3'
miRNA:   3'- gaCGuaGGCGUG-CAG------------CAGCCGCGgUC- -5'
11490 5' -59 NC_003085.1 + 17605 0.7 0.299503
Target:  5'- gCUGC-UCCGC-CGUgccuucCGUCGcGUGCCGGa -3'
miRNA:   3'- -GACGuAGGCGuGCA------GCAGC-CGCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.