miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11491 3' -60.6 NC_003085.1 + 43343 0.66 0.450484
Target:  5'- cGUACCUCCccgcccuucgcGGCGUCguaGGC-GGCaAGCa -3'
miRNA:   3'- -CGUGGAGG-----------CUGCAGa--CCGgCCGgUCG- -5'
11491 3' -60.6 NC_003085.1 + 35093 0.66 0.441019
Target:  5'- cCAUCUgCGACGUCaccccguugagUGGCaGGuCCGGCc -3'
miRNA:   3'- cGUGGAgGCUGCAG-----------ACCGgCC-GGUCG- -5'
11491 3' -60.6 NC_003085.1 + 27419 0.66 0.441019
Target:  5'- aCGCCUUCGAUGgugCUGcuGCCacgcaGGCCAGa -3'
miRNA:   3'- cGUGGAGGCUGCa--GAC--CGG-----CCGGUCg -5'
11491 3' -60.6 NC_003085.1 + 31120 0.66 0.441019
Target:  5'- uGCACCgccCCGuaaggcagcGCGUUgcGGCugcccuucggaCGGCCAGCg -3'
miRNA:   3'- -CGUGGa--GGC---------UGCAGa-CCG-----------GCCGGUCG- -5'
11491 3' -60.6 NC_003085.1 + 34686 0.66 0.441019
Target:  5'- uGCACC-CCGcgcCGUUUGGCCucGUguGCg -3'
miRNA:   3'- -CGUGGaGGCu--GCAGACCGGc-CGguCG- -5'
11491 3' -60.6 NC_003085.1 + 41137 0.66 0.431668
Target:  5'- gGCACC-CCGuacugCUGGCCGGaugccuccaaCGGCu -3'
miRNA:   3'- -CGUGGaGGCugca-GACCGGCCg---------GUCG- -5'
11491 3' -60.6 NC_003085.1 + 23308 0.66 0.431668
Target:  5'- gGguCCg-CGACGUC-GG-UGGCCAGCa -3'
miRNA:   3'- -CguGGagGCUGCAGaCCgGCCGGUCG- -5'
11491 3' -60.6 NC_003085.1 + 14888 0.66 0.430739
Target:  5'- aCACCUUcaaccuggcugugCGGCGcacgCgGGCCGGCUGGUg -3'
miRNA:   3'- cGUGGAG-------------GCUGCa---GaCCGGCCGGUCG- -5'
11491 3' -60.6 NC_003085.1 + 31015 0.66 0.422434
Target:  5'- cGCuCCUCCagGACGUCcacgacgcgGGCaaaggcccuguCGGCCAGUc -3'
miRNA:   3'- -CGuGGAGG--CUGCAGa--------CCG-----------GCCGGUCG- -5'
11491 3' -60.6 NC_003085.1 + 42343 0.66 0.422434
Target:  5'- uCACCagCCGGCGcgugaccgUCUu-CCGGCCGGCg -3'
miRNA:   3'- cGUGGa-GGCUGC--------AGAccGGCCGGUCG- -5'
11491 3' -60.6 NC_003085.1 + 12553 0.66 0.422433
Target:  5'- cCACCcgCCGcCG-CUGGCCgGGCUGGg -3'
miRNA:   3'- cGUGGa-GGCuGCaGACCGG-CCGGUCg -5'
11491 3' -60.6 NC_003085.1 + 33620 0.66 0.419687
Target:  5'- -gGCCUUCGAaGUCUgggccaccacaGGCgaagagggccacggCGGCCAGCa -3'
miRNA:   3'- cgUGGAGGCUgCAGA-----------CCG--------------GCCGGUCG- -5'
11491 3' -60.6 NC_003085.1 + 45605 0.66 0.413319
Target:  5'- cGCGCCgucgacgcgCCGugGUcCUGGauGGgCAGUg -3'
miRNA:   3'- -CGUGGa--------GGCugCA-GACCggCCgGUCG- -5'
11491 3' -60.6 NC_003085.1 + 34496 0.66 0.413319
Target:  5'- -aGCCUCCcgGAgGUg-GGCCG-CCAGCg -3'
miRNA:   3'- cgUGGAGG--CUgCAgaCCGGCcGGUCG- -5'
11491 3' -60.6 NC_003085.1 + 33192 0.66 0.404327
Target:  5'- cGCGCCaguagCgGGCGUcCUGGaggcggCGGCgCAGCa -3'
miRNA:   3'- -CGUGGa----GgCUGCA-GACCg-----GCCG-GUCG- -5'
11491 3' -60.6 NC_003085.1 + 16970 0.66 0.404327
Target:  5'- uCAUCUCCGucAgGUCgagcuucuUGGCCucGGCCAGUa -3'
miRNA:   3'- cGUGGAGGC--UgCAG--------ACCGG--CCGGUCG- -5'
11491 3' -60.6 NC_003085.1 + 34738 0.66 0.404327
Target:  5'- uCGCCagcaCGACGUCccugucgGGCUGGCCuucGGCc -3'
miRNA:   3'- cGUGGag--GCUGCAGa------CCGGCCGG---UCG- -5'
11491 3' -60.6 NC_003085.1 + 12386 0.66 0.404327
Target:  5'- cGCGCCguccaccugcaUCCGcACGUCgucGGC--GCCAGCg -3'
miRNA:   3'- -CGUGG-----------AGGC-UGCAGa--CCGgcCGGUCG- -5'
11491 3' -60.6 NC_003085.1 + 23645 0.66 0.39546
Target:  5'- cCACCUCCGcGCGggugaUGGCaGGCCAc- -3'
miRNA:   3'- cGUGGAGGC-UGCag---ACCGgCCGGUcg -5'
11491 3' -60.6 NC_003085.1 + 40067 0.67 0.386719
Target:  5'- uCGCCUuuagCCG-CG-CUGGCCGGUacucaAGCa -3'
miRNA:   3'- cGUGGA----GGCuGCaGACCGGCCGg----UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.