miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11491 3' -60.6 NC_003085.1 + 662 0.69 0.264884
Target:  5'- aGCACCgccCgGACGUC--GCCGGCCAc- -3'
miRNA:   3'- -CGUGGa--GgCUGCAGacCGGCCGGUcg -5'
11491 3' -60.6 NC_003085.1 + 693 0.69 0.27824
Target:  5'- cCGCgUCCGGCcUCgGGCgCGGCCugAGCa -3'
miRNA:   3'- cGUGgAGGCUGcAGaCCG-GCCGG--UCG- -5'
11491 3' -60.6 NC_003085.1 + 1644 0.71 0.216616
Target:  5'- gGCACaaCCGcaACGUCUgGGCUGGCCAa- -3'
miRNA:   3'- -CGUGgaGGC--UGCAGA-CCGGCCGGUcg -5'
11491 3' -60.6 NC_003085.1 + 2812 0.68 0.305816
Target:  5'- aGCGCCUCgGcaucacuggcaacACGUCUGcCCGG-CAGCc -3'
miRNA:   3'- -CGUGGAGgC-------------UGCAGACcGGCCgGUCG- -5'
11491 3' -60.6 NC_003085.1 + 4168 0.67 0.361271
Target:  5'- aCGCCUCCGACGaa-GGaCCGGaCgGGUg -3'
miRNA:   3'- cGUGGAGGCUGCagaCC-GGCC-GgUCG- -5'
11491 3' -60.6 NC_003085.1 + 5873 0.67 0.352237
Target:  5'- aGCGCCUgCGACcUCUGccguggcGCCGGgUCGGUg -3'
miRNA:   3'- -CGUGGAgGCUGcAGAC-------CGGCC-GGUCG- -5'
11491 3' -60.6 NC_003085.1 + 6357 0.69 0.258403
Target:  5'- gGCugUUcCCGGCGUgcugCUGG-CGGCCGGUc -3'
miRNA:   3'- -CGugGA-GGCUGCA----GACCgGCCGGUCG- -5'
11491 3' -60.6 NC_003085.1 + 7209 0.68 0.313964
Target:  5'- aGUACCUUCGGCaUgUGGauGGCgCAGCg -3'
miRNA:   3'- -CGUGGAGGCUGcAgACCggCCG-GUCG- -5'
11491 3' -60.6 NC_003085.1 + 7953 0.72 0.176078
Target:  5'- aGCGCCcgguagCCGAUgaaGUCgGGCCGGUagCAGCg -3'
miRNA:   3'- -CGUGGa-----GGCUG---CAGaCCGGCCG--GUCG- -5'
11491 3' -60.6 NC_003085.1 + 8475 0.71 0.20055
Target:  5'- cGCGCCagaaggccgCCGAgGcgCUGGCCcGCCAGUa -3'
miRNA:   3'- -CGUGGa--------GGCUgCa-GACCGGcCGGUCG- -5'
11491 3' -60.6 NC_003085.1 + 8597 0.72 0.18075
Target:  5'- cCACCUCCuuguccACG-CUGGCCuccagguuGGCCAGCc -3'
miRNA:   3'- cGUGGAGGc-----UGCaGACCGG--------CCGGUCG- -5'
11491 3' -60.6 NC_003085.1 + 8734 0.67 0.378106
Target:  5'- aGUGCCUCCGGCG-CcGGCgagaGGuccaCCGGCg -3'
miRNA:   3'- -CGUGGAGGCUGCaGaCCGg---CC----GGUCG- -5'
11491 3' -60.6 NC_003085.1 + 8773 0.67 0.352237
Target:  5'- aGCACC-CgGACGUCgucccccUGcGCCGG-CGGCu -3'
miRNA:   3'- -CGUGGaGgCUGCAG-------AC-CGGCCgGUCG- -5'
11491 3' -60.6 NC_003085.1 + 8967 0.67 0.353052
Target:  5'- aGCGgCUCCGGC-UCgagacGCCcGCCAGCa -3'
miRNA:   3'- -CGUgGAGGCUGcAGac---CGGcCGGUCG- -5'
11491 3' -60.6 NC_003085.1 + 9049 0.8 0.044298
Target:  5'- cGCGCCUCCGAagguggugaggaGUUggauGCCGGCCAGCg -3'
miRNA:   3'- -CGUGGAGGCUg-----------CAGac--CGGCCGGUCG- -5'
11491 3' -60.6 NC_003085.1 + 10624 0.77 0.073853
Target:  5'- uGCACCUCCGGCuGUgUGgggcGCCGGCagaGGCa -3'
miRNA:   3'- -CGUGGAGGCUG-CAgAC----CGGCCGg--UCG- -5'
11491 3' -60.6 NC_003085.1 + 11356 0.68 0.329195
Target:  5'- gGCACCUCCGAgaCGauggUGGCgGcGCCGGa -3'
miRNA:   3'- -CGUGGAGGCU--GCag--ACCGgC-CGGUCg -5'
11491 3' -60.6 NC_003085.1 + 11595 1.13 0.00014
Target:  5'- aGCACCUCCGACGUCUGGCCGGCCAGCg -3'
miRNA:   3'- -CGUGGAGGCUGCAGACCGGCCGGUCG- -5'
11491 3' -60.6 NC_003085.1 + 12386 0.66 0.404327
Target:  5'- cGCGCCguccaccugcaUCCGcACGUCgucGGC--GCCAGCg -3'
miRNA:   3'- -CGUGG-----------AGGC-UGCAGa--CCGgcCGGUCG- -5'
11491 3' -60.6 NC_003085.1 + 12553 0.66 0.422433
Target:  5'- cCACCcgCCGcCG-CUGGCCgGGCUGGg -3'
miRNA:   3'- cGUGGa-GGCuGCaGACCGG-CCGGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.