miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11491 5' -54.1 NC_003085.1 + 37322 0.66 0.755411
Target:  5'- gUACaCGGGGUAcGGAGGAGcaGGCACc- -3'
miRNA:   3'- gAUG-GUCCCGUuCCUCUUC--CUGUGcu -5'
11491 5' -54.1 NC_003085.1 + 12068 0.66 0.744842
Target:  5'- gCUACCccGGGGCGAuucucgucuacGGGGcGGGugACGc -3'
miRNA:   3'- -GAUGG--UCCCGUU-----------CCUCuUCCugUGCu -5'
11491 5' -54.1 NC_003085.1 + 178 0.66 0.734154
Target:  5'- -aGCUaAGGGCAGcaucucGGAGu-GGACGCGGc -3'
miRNA:   3'- gaUGG-UCCCGUU------CCUCuuCCUGUGCU- -5'
11491 5' -54.1 NC_003085.1 + 40684 0.66 0.724445
Target:  5'- -cGCCGGcGCAGGGGGAcgacguccgggugcuGGACGCGc -3'
miRNA:   3'- gaUGGUCcCGUUCCUCUu--------------CCUGUGCu -5'
11491 5' -54.1 NC_003085.1 + 35725 0.66 0.723361
Target:  5'- -gGCCAcGGCGAGGGcAGGGugGcCGAu -3'
miRNA:   3'- gaUGGUcCCGUUCCUcUUCCugU-GCU- -5'
11491 5' -54.1 NC_003085.1 + 49158 0.66 0.723361
Target:  5'- -cGCgGGGGCAGcGGAcGGGGACuCGGc -3'
miRNA:   3'- gaUGgUCCCGUU-CCUcUUCCUGuGCU- -5'
11491 5' -54.1 NC_003085.1 + 19204 0.66 0.723361
Target:  5'- -cGCCuGGGGCGgcGGGGGcuGGGCGCc- -3'
miRNA:   3'- gaUGG-UCCCGU--UCCUCuuCCUGUGcu -5'
11491 5' -54.1 NC_003085.1 + 11816 0.66 0.712473
Target:  5'- -cGCCGGGuGCcccgacgcuGAGGcGGAGGACACc- -3'
miRNA:   3'- gaUGGUCC-CG---------UUCCuCUUCCUGUGcu -5'
11491 5' -54.1 NC_003085.1 + 41171 0.66 0.712473
Target:  5'- gCUACCuGGGCAAGGGGcuccagcguccAGaGACGCc- -3'
miRNA:   3'- -GAUGGuCCCGUUCCUCu----------UC-CUGUGcu -5'
11491 5' -54.1 NC_003085.1 + 484 0.67 0.701503
Target:  5'- gUGCCcacGGGCGAGGcuGAGGGCcuGCGu -3'
miRNA:   3'- gAUGGu--CCCGUUCCucUUCCUG--UGCu -5'
11491 5' -54.1 NC_003085.1 + 17110 0.67 0.668219
Target:  5'- -gACCAcGGCAAGGAcgccuaccaGGAGGcACugGAc -3'
miRNA:   3'- gaUGGUcCCGUUCCU---------CUUCC-UGugCU- -5'
11491 5' -54.1 NC_003085.1 + 6120 0.67 0.657039
Target:  5'- -cGCCgcgaAGGGCGGGGAGGuacgagaggagGGcGACAUGGc -3'
miRNA:   3'- gaUGG----UCCCGUUCCUCU-----------UC-CUGUGCU- -5'
11491 5' -54.1 NC_003085.1 + 42788 0.68 0.645834
Target:  5'- gCU-CCAGGGCcaucAGGGAGgcGucCACGAg -3'
miRNA:   3'- -GAuGGUCCCG----UUCCUCuuCcuGUGCU- -5'
11491 5' -54.1 NC_003085.1 + 15637 0.68 0.634617
Target:  5'- ----gAGGGC--GGAGAAGGAgCGCGAc -3'
miRNA:   3'- gauggUCCCGuuCCUCUUCCU-GUGCU- -5'
11491 5' -54.1 NC_003085.1 + 42018 0.68 0.623397
Target:  5'- -cACCGGGGCAuguGGAuGGAG-ACGCGc -3'
miRNA:   3'- gaUGGUCCCGUu--CCU-CUUCcUGUGCu -5'
11491 5' -54.1 NC_003085.1 + 550 0.68 0.600992
Target:  5'- -aGCCAGGGCGGGGuGGccgucgaagugcAGGGCGa-- -3'
miRNA:   3'- gaUGGUCCCGUUCCuCU------------UCCUGUgcu -5'
11491 5' -54.1 NC_003085.1 + 21905 0.68 0.599874
Target:  5'- cCUGCCAGauGGCGAcgucaccgccgccGGAGAuGGcCACGAg -3'
miRNA:   3'- -GAUGGUC--CCGUU-------------CCUCUuCCuGUGCU- -5'
11491 5' -54.1 NC_003085.1 + 16694 0.68 0.589826
Target:  5'- -cACgCAGGGCGGGGGcuuGGGGCuuGCGAc -3'
miRNA:   3'- gaUG-GUCCCGUUCCUcu-UCCUG--UGCU- -5'
11491 5' -54.1 NC_003085.1 + 29150 0.68 0.589826
Target:  5'- --uCCAGGGUgAAGGuGgcGGGCGCGu -3'
miRNA:   3'- gauGGUCCCG-UUCCuCuuCCUGUGCu -5'
11491 5' -54.1 NC_003085.1 + 19584 0.69 0.556585
Target:  5'- gCUACUacgagcgucaGGuGGCAGGGA--AGGACGCGGa -3'
miRNA:   3'- -GAUGG----------UC-CCGUUCCUcuUCCUGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.