miRNA display CGI


Results 1 - 20 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11492 3' -57.8 NC_003085.1 + 14194 0.66 0.517965
Target:  5'- gUGCCAGcGUCCGGGCU------GCGACa -3'
miRNA:   3'- -ACGGUC-CGGGCUCGAaauccgUGCUG- -5'
11492 3' -57.8 NC_003085.1 + 21608 0.66 0.517965
Target:  5'- aUGCguGGCgCGAGCgacccGCGCGAg -3'
miRNA:   3'- -ACGguCCGgGCUCGaaaucCGUGCUg -5'
11492 3' -57.8 NC_003085.1 + 17974 0.66 0.507425
Target:  5'- cGCCGGcaGCgCGGGCcgcaGGGCACGGa -3'
miRNA:   3'- aCGGUC--CGgGCUCGaaa-UCCGUGCUg -5'
11492 3' -57.8 NC_003085.1 + 44655 0.66 0.507425
Target:  5'- gUGUCGGuG-CCGGGCUUUGGGCcCGuCc -3'
miRNA:   3'- -ACGGUC-CgGGCUCGAAAUCCGuGCuG- -5'
11492 3' -57.8 NC_003085.1 + 32533 0.66 0.507425
Target:  5'- gUGCgGGGCCuugcccuccaCGGGCgg-GGGCugGGg -3'
miRNA:   3'- -ACGgUCCGG----------GCUCGaaaUCCGugCUg -5'
11492 3' -57.8 NC_003085.1 + 40005 0.66 0.507425
Target:  5'- uUGCCcGGCCuCGAGCUcguccaugAGcGC-CGGCa -3'
miRNA:   3'- -ACGGuCCGG-GCUCGAaa------UC-CGuGCUG- -5'
11492 3' -57.8 NC_003085.1 + 3974 0.66 0.486627
Target:  5'- aGCCAGacGgCCGcGCUUgcGaGCGCGACa -3'
miRNA:   3'- aCGGUC--CgGGCuCGAAauC-CGUGCUG- -5'
11492 3' -57.8 NC_003085.1 + 22497 0.66 0.486627
Target:  5'- cUGCgCAGG-CCGAGCUc--GGaCGCGAUg -3'
miRNA:   3'- -ACG-GUCCgGGCUCGAaauCC-GUGCUG- -5'
11492 3' -57.8 NC_003085.1 + 13611 0.66 0.476381
Target:  5'- cGCCAaGGCaCaAGUg--GGGCACGACu -3'
miRNA:   3'- aCGGU-CCGgGcUCGaaaUCCGUGCUG- -5'
11492 3' -57.8 NC_003085.1 + 16309 0.66 0.476381
Target:  5'- cGCCAugacgggauGGCCCGGGagUUGGGCGaaGCg -3'
miRNA:   3'- aCGGU---------CCGGGCUCgaAAUCCGUgcUG- -5'
11492 3' -57.8 NC_003085.1 + 17642 0.67 0.464228
Target:  5'- cUGCgCAGGCgUGAGCcacgggagggAGGCGCuGGCg -3'
miRNA:   3'- -ACG-GUCCGgGCUCGaaa-------UCCGUG-CUG- -5'
11492 3' -57.8 NC_003085.1 + 29131 0.67 0.460213
Target:  5'- cGCCGuGGCCCaGAGUUcauccagggugaaggUggcgggcgcguUGGGCACGGCc -3'
miRNA:   3'- aCGGU-CCGGG-CUCGA---------------A-----------AUCCGUGCUG- -5'
11492 3' -57.8 NC_003085.1 + 10803 0.67 0.456216
Target:  5'- aGCCGGGUgCGAGUgccacuggAGGCggcaaaccccaGCGGCu -3'
miRNA:   3'- aCGGUCCGgGCUCGaaa-----UCCG-----------UGCUG- -5'
11492 3' -57.8 NC_003085.1 + 5992 0.67 0.446308
Target:  5'- uUGCCAguuGGCUCGccuacGGCU--GGGCGCGGa -3'
miRNA:   3'- -ACGGU---CCGGGC-----UCGAaaUCCGUGCUg -5'
11492 3' -57.8 NC_003085.1 + 28182 0.67 0.436521
Target:  5'- gGCCAGGa-CGaAGUc-UGGGCGCGGCa -3'
miRNA:   3'- aCGGUCCggGC-UCGaaAUCCGUGCUG- -5'
11492 3' -57.8 NC_003085.1 + 38336 0.67 0.436521
Target:  5'- aGCuCGGGCCUGGcacGCgcaacuuccUGGGCACGAa -3'
miRNA:   3'- aCG-GUCCGGGCU---CGaa-------AUCCGUGCUg -5'
11492 3' -57.8 NC_003085.1 + 37892 0.67 0.423984
Target:  5'- aGCCAGGCgCGGGCaggacggugcguuGGCGCaGGCc -3'
miRNA:   3'- aCGGUCCGgGCUCGaaau---------CCGUG-CUG- -5'
11492 3' -57.8 NC_003085.1 + 42554 0.68 0.40792
Target:  5'- gGCCAGcGCgCGGGCga-GGGC-UGACg -3'
miRNA:   3'- aCGGUC-CGgGCUCGaaaUCCGuGCUG- -5'
11492 3' -57.8 NC_003085.1 + 2071 0.68 0.389516
Target:  5'- -uCCAGGaggCCGAGCgcgaAGGCuACGACg -3'
miRNA:   3'- acGGUCCg--GGCUCGaaa-UCCG-UGCUG- -5'
11492 3' -57.8 NC_003085.1 + 34417 0.68 0.389516
Target:  5'- gGCUuuGGCCCuGGGCUgcggcUUGGGC-CGGCc -3'
miRNA:   3'- aCGGu-CCGGG-CUCGA-----AAUCCGuGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.