miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11492 5' -55.9 NC_003085.1 + 34842 0.67 0.626003
Target:  5'- gCGUCAagaAGGCGucaUCCGAGCagaaUCGCu -3'
miRNA:   3'- gGCAGUg--UCCGUuucGGGCUCG----AGCG- -5'
11492 5' -55.9 NC_003085.1 + 32799 0.67 0.624905
Target:  5'- -gGUCgACAGGCAgcGCCCGuccugaaGGCauucagCGCa -3'
miRNA:   3'- ggCAG-UGUCCGUuuCGGGC-------UCGa-----GCG- -5'
11492 5' -55.9 NC_003085.1 + 565 0.67 0.615025
Target:  5'- gCCGUCGaagugcaGGGC-GAGCCCccGC-CGCa -3'
miRNA:   3'- -GGCAGUg------UCCGuUUCGGGcuCGaGCG- -5'
11492 5' -55.9 NC_003085.1 + 14200 0.67 0.615025
Target:  5'- gCGUC-CGGGCugcgacAAGCCCGcGCgcaaGCg -3'
miRNA:   3'- gGCAGuGUCCGu-----UUCGGGCuCGag--CG- -5'
11492 5' -55.9 NC_003085.1 + 32941 0.67 0.615025
Target:  5'- aCCGgcucaACAGGCGc-GCCUGccauGCUUGCg -3'
miRNA:   3'- -GGCag---UGUCCGUuuCGGGCu---CGAGCG- -5'
11492 5' -55.9 NC_003085.1 + 2051 0.67 0.615025
Target:  5'- cCCGUCACcauGGaugcCAAGGCCCGgacGGUgaCGCg -3'
miRNA:   3'- -GGCAGUGu--CC----GUUUCGGGC---UCGa-GCG- -5'
11492 5' -55.9 NC_003085.1 + 47511 0.67 0.615025
Target:  5'- cCUGUCGguGGCGAAGCCgcuGC-CGUu -3'
miRNA:   3'- -GGCAGUguCCGUUUCGGgcuCGaGCG- -5'
11492 5' -55.9 NC_003085.1 + 27614 0.67 0.615025
Target:  5'- cCUG-CGCGGuGUguGGAGCCUgggGGGCUCGCc -3'
miRNA:   3'- -GGCaGUGUC-CG--UUUCGGG---CUCGAGCG- -5'
11492 5' -55.9 NC_003085.1 + 488 0.67 0.615025
Target:  5'- ---cCACGGGCGAGGCUgaGGGCcUGCg -3'
miRNA:   3'- ggcaGUGUCCGUUUCGGg-CUCGaGCG- -5'
11492 5' -55.9 NC_003085.1 + 3890 0.67 0.604063
Target:  5'- uCUGUCGCGguGGCAcuGCUCGuGCU-GCg -3'
miRNA:   3'- -GGCAGUGU--CCGUuuCGGGCuCGAgCG- -5'
11492 5' -55.9 NC_003085.1 + 24811 0.67 0.600778
Target:  5'- cCCGUCGCGGcGCGcGGCuuucaaccaggacgCCGAGg-CGCa -3'
miRNA:   3'- -GGCAGUGUC-CGUuUCG--------------GGCUCgaGCG- -5'
11492 5' -55.9 NC_003085.1 + 38173 0.67 0.593124
Target:  5'- gCCGcggCGCAGGUGuuccCCUGGGCUgGCg -3'
miRNA:   3'- -GGCa--GUGUCCGUuuc-GGGCUCGAgCG- -5'
11492 5' -55.9 NC_003085.1 + 22492 0.67 0.582218
Target:  5'- gCCGgcugCGCAGGCcGAGCUCGGa--CGCg -3'
miRNA:   3'- -GGCa---GUGUCCGuUUCGGGCUcgaGCG- -5'
11492 5' -55.9 NC_003085.1 + 8093 0.67 0.582218
Target:  5'- aCCGUCAUgacguGGGUGAcgcGGCCCG-GCcUGCc -3'
miRNA:   3'- -GGCAGUG-----UCCGUU---UCGGGCuCGaGCG- -5'
11492 5' -55.9 NC_003085.1 + 31652 0.67 0.582218
Target:  5'- gCCG-CACAGGCGGcaCCgGGGCggGCg -3'
miRNA:   3'- -GGCaGUGUCCGUUucGGgCUCGagCG- -5'
11492 5' -55.9 NC_003085.1 + 26380 0.67 0.571353
Target:  5'- gCCGUUGCucGGGCcgcuGAGcGCCCaGGGCUgGCa -3'
miRNA:   3'- -GGCAGUG--UCCG----UUU-CGGG-CUCGAgCG- -5'
11492 5' -55.9 NC_003085.1 + 39520 0.67 0.571353
Target:  5'- cUCGUCGCuGGCAucGUCCuGGC-CGUu -3'
miRNA:   3'- -GGCAGUGuCCGUuuCGGGcUCGaGCG- -5'
11492 5' -55.9 NC_003085.1 + 39584 0.67 0.571353
Target:  5'- gCGcCACuGGC-AAGCUgGAGCgcgUCGCg -3'
miRNA:   3'- gGCaGUGuCCGuUUCGGgCUCG---AGCG- -5'
11492 5' -55.9 NC_003085.1 + 613 0.67 0.571353
Target:  5'- gCCGUCcUGGGCGc-GCUCGAGgCUgGCg -3'
miRNA:   3'- -GGCAGuGUCCGUuuCGGGCUC-GAgCG- -5'
11492 5' -55.9 NC_003085.1 + 29119 0.67 0.571353
Target:  5'- cCCGcgCugAGGCGccguGGCCCaGAGUUCa- -3'
miRNA:   3'- -GGCa-GugUCCGUu---UCGGG-CUCGAGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.