miRNA display CGI


Results 1 - 20 of 103 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11494 3' -60.5 NC_003085.1 + 20895 0.66 0.473928
Target:  5'- uGCGCCugcacugcauucuccGUCcaGCAGUcguaGGcGACGACGCcGCg -3'
miRNA:   3'- -CGCGG---------------CAG--CGUCA----CC-CUGCUGCGcCG- -5'
11494 3' -60.5 NC_003085.1 + 28592 0.66 0.470054
Target:  5'- aUGCC-UUGCGcUGGGugGGCggcaccgcaGCGGCg -3'
miRNA:   3'- cGCGGcAGCGUcACCCugCUG---------CGCCG- -5'
11494 3' -60.5 NC_003085.1 + 5565 0.66 0.467159
Target:  5'- gGCGCCGcgaacggugCGCcacgucuacgcccuGGUGcGGACGAugcugagugaCGCGGUg -3'
miRNA:   3'- -CGCGGCa--------GCG--------------UCAC-CCUGCU----------GCGCCG- -5'
11494 3' -60.5 NC_003085.1 + 33997 0.66 0.46044
Target:  5'- uGCGCCG-CGUc-UGGGuu--CGCGGCg -3'
miRNA:   3'- -CGCGGCaGCGucACCCugcuGCGCCG- -5'
11494 3' -60.5 NC_003085.1 + 1155 0.66 0.450932
Target:  5'- cCGCCGagacucgcUUGCGGUaGGGccuACGACGCuGCc -3'
miRNA:   3'- cGCGGC--------AGCGUCA-CCC---UGCUGCGcCG- -5'
11494 3' -60.5 NC_003085.1 + 38171 0.66 0.449987
Target:  5'- cCGCCGcggCGCAGguguuccccUGGGcugGCGGCaacucggGCGGCg -3'
miRNA:   3'- cGCGGCa--GCGUC---------ACCC---UGCUG-------CGCCG- -5'
11494 3' -60.5 NC_003085.1 + 18939 0.66 0.441532
Target:  5'- aGCGCCaUCGCcuacaGGGccccGCGACGgUGGCg -3'
miRNA:   3'- -CGCGGcAGCGuca--CCC----UGCUGC-GCCG- -5'
11494 3' -60.5 NC_003085.1 + 11948 0.66 0.441532
Target:  5'- uCGCCGccugggCGUgaaGGaGGGGCGGCGUGaGCg -3'
miRNA:   3'- cGCGGCa-----GCG---UCaCCCUGCUGCGC-CG- -5'
11494 3' -60.5 NC_003085.1 + 5887 0.66 0.432244
Target:  5'- cUGCCGUgGCGccGGGucggUGACGCGGg -3'
miRNA:   3'- cGCGGCAgCGUcaCCCu---GCUGCGCCg -5'
11494 3' -60.5 NC_003085.1 + 42714 0.66 0.432244
Target:  5'- aGCGgCGgcaccucaggCGUGGgcgucGGGGCGAUGCGGg -3'
miRNA:   3'- -CGCgGCa---------GCGUCa----CCCUGCUGCGCCg -5'
11494 3' -60.5 NC_003085.1 + 39011 0.66 0.432244
Target:  5'- cGCuaCGUCGCGGaGGaGGCGACGgcaugcgugGGCg -3'
miRNA:   3'- -CGcgGCAGCGUCaCC-CUGCUGCg--------CCG- -5'
11494 3' -60.5 NC_003085.1 + 25320 0.66 0.432244
Target:  5'- aCGCCGUgGUggccaccgacaaGGU-GGAUGGCGCGcGCu -3'
miRNA:   3'- cGCGGCAgCG------------UCAcCCUGCUGCGC-CG- -5'
11494 3' -60.5 NC_003085.1 + 2454 0.66 0.432244
Target:  5'- cGCGCCGUCGUcucugAGccUGGGgagaaguuggGCGaaacgcucaagGCGUGGCu -3'
miRNA:   3'- -CGCGGCAGCG-----UC--ACCC----------UGC-----------UGCGCCG- -5'
11494 3' -60.5 NC_003085.1 + 5457 0.66 0.42948
Target:  5'- cCGCCGagGCccgAGUGcgggaguuggaggcGGACaACGCGGCg -3'
miRNA:   3'- cGCGGCagCG---UCAC--------------CCUGcUGCGCCG- -5'
11494 3' -60.5 NC_003085.1 + 21966 0.66 0.423071
Target:  5'- cCGCCGUCGUAcGUccaguuccacaGGccGACGAgGUGGCc -3'
miRNA:   3'- cGCGGCAGCGU-CA-----------CC--CUGCUgCGCCG- -5'
11494 3' -60.5 NC_003085.1 + 42089 0.66 0.423071
Target:  5'- gGCGCCGucggccUCGUAcUGGaGCGGCGCccaggGGCg -3'
miRNA:   3'- -CGCGGC------AGCGUcACCcUGCUGCG-----CCG- -5'
11494 3' -60.5 NC_003085.1 + 24840 0.66 0.42216
Target:  5'- aCGCCGaggCGCAGauucucgccUGGGcCGGCaaccucaccugcaGCGGCg -3'
miRNA:   3'- cGCGGCa--GCGUC---------ACCCuGCUG-------------CGCCG- -5'
11494 3' -60.5 NC_003085.1 + 12268 0.67 0.414016
Target:  5'- cGCGaCCGgUGCA-UGGaacucgcacgcGACGGCGCGGUg -3'
miRNA:   3'- -CGC-GGCaGCGUcACC-----------CUGCUGCGCCG- -5'
11494 3' -60.5 NC_003085.1 + 35152 0.67 0.414016
Target:  5'- gGUGCCGUCugGCGacucuuacUGaGGGCuGCGCGGCg -3'
miRNA:   3'- -CGCGGCAG--CGUc-------AC-CCUGcUGCGCCG- -5'
11494 3' -60.5 NC_003085.1 + 37065 0.67 0.414016
Target:  5'- gGCGCCGacgacgUGCGGaugcagGuGGACGGCGC-GCa -3'
miRNA:   3'- -CGCGGCa-----GCGUCa-----C-CCUGCUGCGcCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.