miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11494 3' -60.5 NC_003085.1 + 29733 0.7 0.272909
Target:  5'- gGCGUCGUCGCcca-GGACGugGCcGCc -3'
miRNA:   3'- -CGCGGCAGCGucacCCUGCugCGcCG- -5'
11494 3' -60.5 NC_003085.1 + 29104 0.71 0.21816
Target:  5'- cCGgCGUCaGCAGc--GGCGACGCGGCg -3'
miRNA:   3'- cGCgGCAG-CGUCaccCUGCUGCGCCG- -5'
11494 3' -60.5 NC_003085.1 + 1567 0.71 0.229455
Target:  5'- cGCGUCGcCuGCAGUu--GCGGCGCGGCg -3'
miRNA:   3'- -CGCGGCaG-CGUCAcccUGCUGCGCCG- -5'
11494 3' -60.5 NC_003085.1 + 15206 0.71 0.235285
Target:  5'- aGCGCCG-CGCcgcggaAGUGGG-CGAgGUGGa -3'
miRNA:   3'- -CGCGGCaGCG------UCACCCuGCUgCGCCg -5'
11494 3' -60.5 NC_003085.1 + 17865 0.7 0.247318
Target:  5'- gGCGCCGuUUGCAGggaGGGAgUGACaUGGCc -3'
miRNA:   3'- -CGCGGC-AGCGUCa--CCCU-GCUGcGCCG- -5'
11494 3' -60.5 NC_003085.1 + 17669 0.7 0.247318
Target:  5'- gGCGCUGgCGCuGagaccGACGACGCGGCc -3'
miRNA:   3'- -CGCGGCaGCGuCacc--CUGCUGCGCCG- -5'
11494 3' -60.5 NC_003085.1 + 41009 0.7 0.253524
Target:  5'- gGCGUCGucaUCGCcGUGGG-CGuCGCuGGCg -3'
miRNA:   3'- -CGCGGC---AGCGuCACCCuGCuGCG-CCG- -5'
11494 3' -60.5 NC_003085.1 + 13451 0.7 0.259218
Target:  5'- cGUGCucugguaCGUCGCGGUcaucGCGGCGCGGCu -3'
miRNA:   3'- -CGCG-------GCAGCGUCAccc-UGCUGCGCCG- -5'
11494 3' -60.5 NC_003085.1 + 471 0.7 0.272909
Target:  5'- gGCGCUGUUGCAGgugcccacGGGCGAgGCugagGGCc -3'
miRNA:   3'- -CGCGGCAGCGUCac------CCUGCUgCG----CCG- -5'
11494 3' -60.5 NC_003085.1 + 12053 0.72 0.191992
Target:  5'- uGCGCCGcuUCGCGGgcuaccccGGGGCGAuucucgucuaCGgGGCg -3'
miRNA:   3'- -CGCGGC--AGCGUCa-------CCCUGCU----------GCgCCG- -5'
11494 3' -60.5 NC_003085.1 + 30344 0.72 0.182318
Target:  5'- aCGCUGUCGC---GGGGCGcACuGCGGCg -3'
miRNA:   3'- cGCGGCAGCGucaCCCUGC-UG-CGCCG- -5'
11494 3' -60.5 NC_003085.1 + 20003 0.72 0.180905
Target:  5'- cCGCCGUCGUcGUGGGGCcgcaacucagccugGAgGaCGGCa -3'
miRNA:   3'- cGCGGCAGCGuCACCCUG--------------CUgC-GCCG- -5'
11494 3' -60.5 NC_003085.1 + 22759 0.82 0.038399
Target:  5'- cGCGCCGacgacgcccgcCGCGGUGGcGACGGCaGCGGCa -3'
miRNA:   3'- -CGCGGCa----------GCGUCACC-CUGCUG-CGCCG- -5'
11494 3' -60.5 NC_003085.1 + 40683 0.79 0.065344
Target:  5'- cCGCCGgCGCAGgGGGACGACGUccgGGUg -3'
miRNA:   3'- cGCGGCaGCGUCaCCCUGCUGCG---CCG- -5'
11494 3' -60.5 NC_003085.1 + 26712 0.78 0.073002
Target:  5'- aGCGCg--CGCAGggcGGuGACGGCGCGGCg -3'
miRNA:   3'- -CGCGgcaGCGUCa--CC-CUGCUGCGCCG- -5'
11494 3' -60.5 NC_003085.1 + 32143 0.76 0.098747
Target:  5'- gGCgGCUGguggCGCGGUGGGuuACGGCGuCGGCc -3'
miRNA:   3'- -CG-CGGCa---GCGUCACCC--UGCUGC-GCCG- -5'
11494 3' -60.5 NC_003085.1 + 9165 0.74 0.129391
Target:  5'- cCGCCG-CGCAguccugagucuGUGGGuCGGCGCGGg -3'
miRNA:   3'- cGCGGCaGCGU-----------CACCCuGCUGCGCCg -5'
11494 3' -60.5 NC_003085.1 + 27289 0.74 0.147823
Target:  5'- cCGCUGUCGCGcagGGGACuGGCGuCGGUg -3'
miRNA:   3'- cGCGGCAGCGUca-CCCUG-CUGC-GCCG- -5'
11494 3' -60.5 NC_003085.1 + 28308 0.73 0.173078
Target:  5'- cGCaGCagGUgCGCGGUGGGACGgGCGUGGg -3'
miRNA:   3'- -CG-CGg-CA-GCGUCACCCUGC-UGCGCCg -5'
11494 3' -60.5 NC_003085.1 + 46940 0.72 0.177645
Target:  5'- gGCGCg--CGCAG-GGGcCGACGCGGg -3'
miRNA:   3'- -CGCGgcaGCGUCaCCCuGCUGCGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.