miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11494 5' -57.8 NC_003085.1 + 7277 0.66 0.547857
Target:  5'- -aGCgccuCAUGCCgaGGCUGGcuGCGACGg -3'
miRNA:   3'- gaCGagu-GUGCGGa-CCGACC--UGCUGU- -5'
11494 5' -57.8 NC_003085.1 + 27345 0.66 0.547857
Target:  5'- gCUGCU-GCgGCGCCgGGCucugcUGGGCGGCc -3'
miRNA:   3'- -GACGAgUG-UGCGGaCCG-----ACCUGCUGu -5'
11494 5' -57.8 NC_003085.1 + 4361 0.66 0.541435
Target:  5'- -cGCcgCGCGCGaCCUGGaCcacgcgaaggaguugUGGACGGCGg -3'
miRNA:   3'- gaCGa-GUGUGC-GGACC-G---------------ACCUGCUGU- -5'
11494 5' -57.8 NC_003085.1 + 21349 0.66 0.537169
Target:  5'- cCUGCUggaGCGCGCCauccGCgUGGugGGCGu -3'
miRNA:   3'- -GACGAg--UGUGCGGac--CG-ACCugCUGU- -5'
11494 5' -57.8 NC_003085.1 + 17150 0.66 0.537169
Target:  5'- uCUGCUacugGCGCGCUgaGGC-GGACGugGc -3'
miRNA:   3'- -GACGAg---UGUGCGGa-CCGaCCUGCugU- -5'
11494 5' -57.8 NC_003085.1 + 40980 0.66 0.505568
Target:  5'- -cGCUCGCAagcgGCaagGGCUGGcccaGCGGCGu -3'
miRNA:   3'- gaCGAGUGUg---CGga-CCGACC----UGCUGU- -5'
11494 5' -57.8 NC_003085.1 + 25776 0.66 0.504528
Target:  5'- gCUGCUgCGCGgGCCcgcugcgUGGacgcCUGGGCGGCGu -3'
miRNA:   3'- -GACGA-GUGUgCGG-------ACC----GACCUGCUGU- -5'
11494 5' -57.8 NC_003085.1 + 5988 0.66 0.49521
Target:  5'- gUGCUUGCcaguuggcuCGCCUacGGCUGGGCG-CGg -3'
miRNA:   3'- gACGAGUGu--------GCGGA--CCGACCUGCuGU- -5'
11494 5' -57.8 NC_003085.1 + 36004 0.67 0.48495
Target:  5'- -cGCUcCGCGacaGCUUGGC-GGAUGGCGg -3'
miRNA:   3'- gaCGA-GUGUg--CGGACCGaCCUGCUGU- -5'
11494 5' -57.8 NC_003085.1 + 38135 0.67 0.48495
Target:  5'- -gGCUCGC-CGCCcugcUGGCguUGGugGugGc -3'
miRNA:   3'- gaCGAGUGuGCGG----ACCG--ACCugCugU- -5'
11494 5' -57.8 NC_003085.1 + 19855 0.67 0.463743
Target:  5'- gCUG-UCGCACuacuucgGCCU-GCUGGACGGCu -3'
miRNA:   3'- -GACgAGUGUG-------CGGAcCGACCUGCUGu -5'
11494 5' -57.8 NC_003085.1 + 20018 0.67 0.454804
Target:  5'- -gGC-CGCAacucaGCCUGGa-GGACGGCAu -3'
miRNA:   3'- gaCGaGUGUg----CGGACCgaCCUGCUGU- -5'
11494 5' -57.8 NC_003085.1 + 11294 0.67 0.454804
Target:  5'- -gGCUUcggaaGCGCGCgCUGGCgcuugUGGACGAgGa -3'
miRNA:   3'- gaCGAG-----UGUGCG-GACCG-----ACCUGCUgU- -5'
11494 5' -57.8 NC_003085.1 + 11944 0.67 0.454804
Target:  5'- uUGgUCGC-CGCCUgGGCgugaaggagGGGCGGCGu -3'
miRNA:   3'- gACgAGUGuGCGGA-CCGa--------CCUGCUGU- -5'
11494 5' -57.8 NC_003085.1 + 20405 0.67 0.435279
Target:  5'- -cGCggACACGCCccagGGCUGGGCccaacgcuGGCAg -3'
miRNA:   3'- gaCGagUGUGCGGa---CCGACCUG--------CUGU- -5'
11494 5' -57.8 NC_003085.1 + 10613 0.68 0.4257
Target:  5'- -cGC-CGCGCGCCgucGCagugGGACGACGc -3'
miRNA:   3'- gaCGaGUGUGCGGac-CGa---CCUGCUGU- -5'
11494 5' -57.8 NC_003085.1 + 26031 0.68 0.416248
Target:  5'- cCUGCU---GCGCCU-GCUGGGCGAa- -3'
miRNA:   3'- -GACGAgugUGCGGAcCGACCUGCUgu -5'
11494 5' -57.8 NC_003085.1 + 37857 0.68 0.398648
Target:  5'- gCUGCcugCGCugGCCggccagacgucggagGuGCUGGugGGCAc -3'
miRNA:   3'- -GACGa--GUGugCGGa--------------C-CGACCugCUGU- -5'
11494 5' -57.8 NC_003085.1 + 12561 0.68 0.397735
Target:  5'- -cGC-CGCugGCCgGGCUgGGACGGu- -3'
miRNA:   3'- gaCGaGUGugCGGaCCGA-CCUGCUgu -5'
11494 5' -57.8 NC_003085.1 + 39961 0.68 0.395004
Target:  5'- aUGCUCACGCacaccuucuccucaGCCUcauaucGCUGGACGAa- -3'
miRNA:   3'- gACGAGUGUG--------------CGGAc-----CGACCUGCUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.