miRNA display CGI


Results 1 - 20 of 116 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11495 5' -60.2 NC_003085.1 + 43920 0.66 0.445637
Target:  5'- cCAGGcccuuUGCGCGCAcuucGCGCaccagugcgagcacgUGCCgACGCg -3'
miRNA:   3'- -GUCC-----AUGCGCGU----CGCGa--------------GCGGgUGCG- -5'
11495 5' -60.2 NC_003085.1 + 45555 0.66 0.444682
Target:  5'- uGGcGUGucaacuccuCGCGCAGCGCg-GCCUcaauGCGCu -3'
miRNA:   3'- gUC-CAU---------GCGCGUCGCGagCGGG----UGCG- -5'
11495 5' -60.2 NC_003085.1 + 45945 0.66 0.444682
Target:  5'- aCGGGUcCGCGUAGagcuuguacaGCgUCGCCUugGg -3'
miRNA:   3'- -GUCCAuGCGCGUCg---------CG-AGCGGGugCg -5'
11495 5' -60.2 NC_003085.1 + 628 0.66 0.444682
Target:  5'- gCGGGU-UGUGCuGCGCcaaggCGCUCgGCGCg -3'
miRNA:   3'- -GUCCAuGCGCGuCGCGa----GCGGG-UGCG- -5'
11495 5' -60.2 NC_003085.1 + 25571 0.66 0.444682
Target:  5'- ---cUGCGCGUGGacggcugcugcCGUUCGCUCACGCc -3'
miRNA:   3'- guccAUGCGCGUC-----------GCGAGCGGGUGCG- -5'
11495 5' -60.2 NC_003085.1 + 8705 0.66 0.438977
Target:  5'- uCGGGUGgGCcucgacgaacacgugGCAGUGCUa-CCUGCGCg -3'
miRNA:   3'- -GUCCAUgCG---------------CGUCGCGAgcGGGUGCG- -5'
11495 5' -60.2 NC_003085.1 + 27099 0.66 0.435196
Target:  5'- -cGGUACaCGUAGCGg-CGCCuCACGg -3'
miRNA:   3'- guCCAUGcGCGUCGCgaGCGG-GUGCg -5'
11495 5' -60.2 NC_003085.1 + 42412 0.66 0.435196
Target:  5'- uGGGccuuuCGCGCGG-GCucaUCGCCCAcccCGCg -3'
miRNA:   3'- gUCCau---GCGCGUCgCG---AGCGGGU---GCG- -5'
11495 5' -60.2 NC_003085.1 + 12032 0.66 0.435196
Target:  5'- gGGGUugGCGCu-CGCUaGCCgcaCugGCg -3'
miRNA:   3'- gUCCAugCGCGucGCGAgCGG---GugCG- -5'
11495 5' -60.2 NC_003085.1 + 42825 0.66 0.435196
Target:  5'- aCGGGUccgGCGCugGCGGCGCgCGUCUuCGUc -3'
miRNA:   3'- -GUCCA---UGCG--CGUCGCGaGCGGGuGCG- -5'
11495 5' -60.2 NC_003085.1 + 12097 0.66 0.435196
Target:  5'- gCGGGUgacGCGCGCaAGuCGgaCGCCCcCGa -3'
miRNA:   3'- -GUCCA---UGCGCG-UC-GCgaGCGGGuGCg -5'
11495 5' -60.2 NC_003085.1 + 5419 0.66 0.435196
Target:  5'- gAGGgGCGCGUcacgcuGCGCUCGgUCAUGg -3'
miRNA:   3'- gUCCaUGCGCGu-----CGCGAGCgGGUGCg -5'
11495 5' -60.2 NC_003085.1 + 21272 0.66 0.424898
Target:  5'- aAGGUG-GUGCcGCGCccagacuUCGUCCugGCc -3'
miRNA:   3'- gUCCAUgCGCGuCGCG-------AGCGGGugCG- -5'
11495 5' -60.2 NC_003085.1 + 41325 0.66 0.416582
Target:  5'- ----gAUGCGCGGCGCUUGagcagguccaCCACGUc -3'
miRNA:   3'- guccaUGCGCGUCGCGAGCg---------GGUGCG- -5'
11495 5' -60.2 NC_003085.1 + 21756 0.66 0.416582
Target:  5'- gAGGcGCGacaGCgGGCGgaCGCCCagACGCg -3'
miRNA:   3'- gUCCaUGCg--CG-UCGCgaGCGGG--UGCG- -5'
11495 5' -60.2 NC_003085.1 + 8782 0.66 0.407459
Target:  5'- aAGGUgGCGCGCAGC-CUguUGCUCAC-Cg -3'
miRNA:   3'- gUCCA-UGCGCGUCGcGA--GCGGGUGcG- -5'
11495 5' -60.2 NC_003085.1 + 43526 0.66 0.407459
Target:  5'- aCGGGaacgGCGCcgaagGCGGCGCguccaGCUUGCGCg -3'
miRNA:   3'- -GUCCa---UGCG-----CGUCGCGag---CGGGUGCG- -5'
11495 5' -60.2 NC_003085.1 + 14197 0.66 0.407459
Target:  5'- cCAGcGUcCGgGCuGCGacaaGCCCGCGCg -3'
miRNA:   3'- -GUC-CAuGCgCGuCGCgag-CGGGUGCG- -5'
11495 5' -60.2 NC_003085.1 + 35872 0.66 0.407459
Target:  5'- uGGcGUcaugGCGCGCcuccGGUGCccaCGUCCACGCg -3'
miRNA:   3'- gUC-CA----UGCGCG----UCGCGa--GCGGGUGCG- -5'
11495 5' -60.2 NC_003085.1 + 45212 0.66 0.407459
Target:  5'- gAGGccaaGCGCGCgaAGCGCUgCGgCCCggcugACGCu -3'
miRNA:   3'- gUCCa---UGCGCG--UCGCGA-GC-GGG-----UGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.