Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11496 | 3' | -57.1 | NC_003085.1 | + | 34770 | 0.66 | 0.615579 |
Target: 5'- uCGGCcuugGCcUUCGUCCAGcgccACGGCGCCu- -3' miRNA: 3'- -GUCG----UGuAGGCAGGUC----UGCUGCGGca -5' |
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11496 | 3' | -57.1 | NC_003085.1 | + | 8661 | 0.66 | 0.615579 |
Target: 5'- gCAGCACGguuucagcCCGUCCGcgcGCGACGCg-- -3' miRNA: 3'- -GUCGUGUa-------GGCAGGUc--UGCUGCGgca -5' |
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11496 | 3' | -57.1 | NC_003085.1 | + | 205 | 0.66 | 0.615579 |
Target: 5'- gCGGCGCGgcgaacUCaGUCgGGACGACGUCa- -3' miRNA: 3'- -GUCGUGU------AGgCAGgUCUGCUGCGGca -5' |
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11496 | 3' | -57.1 | NC_003085.1 | + | 18312 | 0.66 | 0.615579 |
Target: 5'- cCGGCGCuggCCGUCCGaAgGGCaGCCGc -3' miRNA: 3'- -GUCGUGua-GGCAGGUcUgCUG-CGGCa -5' |
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11496 | 3' | -57.1 | NC_003085.1 | + | 22949 | 0.66 | 0.615579 |
Target: 5'- aCGGCGCGg-CGaagCCGGACGA-GCCGg -3' miRNA: 3'- -GUCGUGUagGCa--GGUCUGCUgCGGCa -5' |
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11496 | 3' | -57.1 | NC_003085.1 | + | 21422 | 0.66 | 0.615579 |
Target: 5'- aGGCGCucggcUCCGaCaGGAgGACGCCGUc -3' miRNA: 3'- gUCGUGu----AGGCaGgUCUgCUGCGGCA- -5' |
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11496 | 3' | -57.1 | NC_003085.1 | + | 20604 | 0.66 | 0.615579 |
Target: 5'- gCAGCGCcgCgGaagUCGGGCGGCGCgGg -3' miRNA: 3'- -GUCGUGuaGgCa--GGUCUGCUGCGgCa -5' |
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11496 | 3' | -57.1 | NC_003085.1 | + | 32051 | 0.66 | 0.614486 |
Target: 5'- gCGGCACAUCCuggccugGUCCcGGCGGuacgcuCGCCa- -3' miRNA: 3'- -GUCGUGUAGG-------CAGGuCUGCU------GCGGca -5' |
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11496 | 3' | -57.1 | NC_003085.1 | + | 29137 | 0.66 | 0.604661 |
Target: 5'- aGGCGauugaGUCCGccuacUCgCAGGCGACGUCGc -3' miRNA: 3'- gUCGUg----UAGGC-----AG-GUCUGCUGCGGCa -5' |
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11496 | 3' | -57.1 | NC_003085.1 | + | 22097 | 0.66 | 0.604661 |
Target: 5'- aGGCGCAgaagcaggCCGcCCAGcagagccCGGCGCCGc -3' miRNA: 3'- gUCGUGUa-------GGCaGGUCu------GCUGCGGCa -5' |
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11496 | 3' | -57.1 | NC_003085.1 | + | 24229 | 0.66 | 0.604661 |
Target: 5'- gAGCGCA-CCa---GGGCGGCGCCGg -3' miRNA: 3'- gUCGUGUaGGcaggUCUGCUGCGGCa -5' |
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11496 | 3' | -57.1 | NC_003085.1 | + | 31849 | 0.66 | 0.595944 |
Target: 5'- aAGCACGcgccucgcaguugaaUCCGUCCuccuacgAGcucguccGCGAUGCCGUg -3' miRNA: 3'- gUCGUGU---------------AGGCAGG-------UC-------UGCUGCGGCA- -5' |
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11496 | 3' | -57.1 | NC_003085.1 | + | 23701 | 0.66 | 0.593767 |
Target: 5'- -cGCGCAgcagccuccUCCGUCaAGACGGCcCCGg -3' miRNA: 3'- guCGUGU---------AGGCAGgUCUGCUGcGGCa -5' |
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11496 | 3' | -57.1 | NC_003085.1 | + | 43708 | 0.66 | 0.593767 |
Target: 5'- -uGCACGUCCGUCaauGGcccaauCGACGCgGg -3' miRNA: 3'- guCGUGUAGGCAGg--UCu-----GCUGCGgCa -5' |
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11496 | 3' | -57.1 | NC_003085.1 | + | 43902 | 0.66 | 0.593767 |
Target: 5'- uGGCGCA-CCGUC---GCGGCGCCa- -3' miRNA: 3'- gUCGUGUaGGCAGgucUGCUGCGGca -5' |
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11496 | 3' | -57.1 | NC_003085.1 | + | 39197 | 0.66 | 0.582905 |
Target: 5'- gAGaCACGUCCGuacuuUCCAGguggcacgGCGAUGCCa- -3' miRNA: 3'- gUC-GUGUAGGC-----AGGUC--------UGCUGCGGca -5' |
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11496 | 3' | -57.1 | NC_003085.1 | + | 42350 | 0.66 | 0.582905 |
Target: 5'- cCGGCGCGUgaCCGUCUuccggccggcgaGGAUGGCGCUc- -3' miRNA: 3'- -GUCGUGUA--GGCAGG------------UCUGCUGCGGca -5' |
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11496 | 3' | -57.1 | NC_003085.1 | + | 24998 | 0.66 | 0.572083 |
Target: 5'- uCGGaCACGUCCGcggUgCAGAaGGCGCCGc -3' miRNA: 3'- -GUC-GUGUAGGC---AgGUCUgCUGCGGCa -5' |
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11496 | 3' | -57.1 | NC_003085.1 | + | 46442 | 0.66 | 0.56131 |
Target: 5'- -cGUGCA-CCGUCUGGGCGuCGuCCGUg -3' miRNA: 3'- guCGUGUaGGCAGGUCUGCuGC-GGCA- -5' |
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11496 | 3' | -57.1 | NC_003085.1 | + | 20070 | 0.66 | 0.56131 |
Target: 5'- gCGGgACAUCCGcuUCCAcGCG-CGCUGUg -3' miRNA: 3'- -GUCgUGUAGGC--AGGUcUGCuGCGGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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