miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11496 3' -57.1 NC_003085.1 + 34770 0.66 0.615579
Target:  5'- uCGGCcuugGCcUUCGUCCAGcgccACGGCGCCu- -3'
miRNA:   3'- -GUCG----UGuAGGCAGGUC----UGCUGCGGca -5'
11496 3' -57.1 NC_003085.1 + 8661 0.66 0.615579
Target:  5'- gCAGCACGguuucagcCCGUCCGcgcGCGACGCg-- -3'
miRNA:   3'- -GUCGUGUa-------GGCAGGUc--UGCUGCGgca -5'
11496 3' -57.1 NC_003085.1 + 205 0.66 0.615579
Target:  5'- gCGGCGCGgcgaacUCaGUCgGGACGACGUCa- -3'
miRNA:   3'- -GUCGUGU------AGgCAGgUCUGCUGCGGca -5'
11496 3' -57.1 NC_003085.1 + 18312 0.66 0.615579
Target:  5'- cCGGCGCuggCCGUCCGaAgGGCaGCCGc -3'
miRNA:   3'- -GUCGUGua-GGCAGGUcUgCUG-CGGCa -5'
11496 3' -57.1 NC_003085.1 + 22949 0.66 0.615579
Target:  5'- aCGGCGCGg-CGaagCCGGACGA-GCCGg -3'
miRNA:   3'- -GUCGUGUagGCa--GGUCUGCUgCGGCa -5'
11496 3' -57.1 NC_003085.1 + 21422 0.66 0.615579
Target:  5'- aGGCGCucggcUCCGaCaGGAgGACGCCGUc -3'
miRNA:   3'- gUCGUGu----AGGCaGgUCUgCUGCGGCA- -5'
11496 3' -57.1 NC_003085.1 + 20604 0.66 0.615579
Target:  5'- gCAGCGCcgCgGaagUCGGGCGGCGCgGg -3'
miRNA:   3'- -GUCGUGuaGgCa--GGUCUGCUGCGgCa -5'
11496 3' -57.1 NC_003085.1 + 32051 0.66 0.614486
Target:  5'- gCGGCACAUCCuggccugGUCCcGGCGGuacgcuCGCCa- -3'
miRNA:   3'- -GUCGUGUAGG-------CAGGuCUGCU------GCGGca -5'
11496 3' -57.1 NC_003085.1 + 29137 0.66 0.604661
Target:  5'- aGGCGauugaGUCCGccuacUCgCAGGCGACGUCGc -3'
miRNA:   3'- gUCGUg----UAGGC-----AG-GUCUGCUGCGGCa -5'
11496 3' -57.1 NC_003085.1 + 22097 0.66 0.604661
Target:  5'- aGGCGCAgaagcaggCCGcCCAGcagagccCGGCGCCGc -3'
miRNA:   3'- gUCGUGUa-------GGCaGGUCu------GCUGCGGCa -5'
11496 3' -57.1 NC_003085.1 + 24229 0.66 0.604661
Target:  5'- gAGCGCA-CCa---GGGCGGCGCCGg -3'
miRNA:   3'- gUCGUGUaGGcaggUCUGCUGCGGCa -5'
11496 3' -57.1 NC_003085.1 + 31849 0.66 0.595944
Target:  5'- aAGCACGcgccucgcaguugaaUCCGUCCuccuacgAGcucguccGCGAUGCCGUg -3'
miRNA:   3'- gUCGUGU---------------AGGCAGG-------UC-------UGCUGCGGCA- -5'
11496 3' -57.1 NC_003085.1 + 23701 0.66 0.593767
Target:  5'- -cGCGCAgcagccuccUCCGUCaAGACGGCcCCGg -3'
miRNA:   3'- guCGUGU---------AGGCAGgUCUGCUGcGGCa -5'
11496 3' -57.1 NC_003085.1 + 43708 0.66 0.593767
Target:  5'- -uGCACGUCCGUCaauGGcccaauCGACGCgGg -3'
miRNA:   3'- guCGUGUAGGCAGg--UCu-----GCUGCGgCa -5'
11496 3' -57.1 NC_003085.1 + 43902 0.66 0.593767
Target:  5'- uGGCGCA-CCGUC---GCGGCGCCa- -3'
miRNA:   3'- gUCGUGUaGGCAGgucUGCUGCGGca -5'
11496 3' -57.1 NC_003085.1 + 39197 0.66 0.582905
Target:  5'- gAGaCACGUCCGuacuuUCCAGguggcacgGCGAUGCCa- -3'
miRNA:   3'- gUC-GUGUAGGC-----AGGUC--------UGCUGCGGca -5'
11496 3' -57.1 NC_003085.1 + 42350 0.66 0.582905
Target:  5'- cCGGCGCGUgaCCGUCUuccggccggcgaGGAUGGCGCUc- -3'
miRNA:   3'- -GUCGUGUA--GGCAGG------------UCUGCUGCGGca -5'
11496 3' -57.1 NC_003085.1 + 24998 0.66 0.572083
Target:  5'- uCGGaCACGUCCGcggUgCAGAaGGCGCCGc -3'
miRNA:   3'- -GUC-GUGUAGGC---AgGUCUgCUGCGGCa -5'
11496 3' -57.1 NC_003085.1 + 46442 0.66 0.56131
Target:  5'- -cGUGCA-CCGUCUGGGCGuCGuCCGUg -3'
miRNA:   3'- guCGUGUaGGCAGGUCUGCuGC-GGCA- -5'
11496 3' -57.1 NC_003085.1 + 20070 0.66 0.56131
Target:  5'- gCGGgACAUCCGcuUCCAcGCG-CGCUGUg -3'
miRNA:   3'- -GUCgUGUAGGC--AGGUcUGCuGCGGCA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.