miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11496 3' -57.1 NC_003085.1 + 205 0.66 0.615579
Target:  5'- gCGGCGCGgcgaacUCaGUCgGGACGACGUCa- -3'
miRNA:   3'- -GUCGUGU------AGgCAGgUCUGCUGCGGca -5'
11496 3' -57.1 NC_003085.1 + 653 0.71 0.324193
Target:  5'- aGGCGCucgagcaCCGcCCGGACGuCGCCGg -3'
miRNA:   3'- gUCGUGua-----GGCaGGUCUGCuGCGGCa -5'
11496 3' -57.1 NC_003085.1 + 941 0.69 0.428694
Target:  5'- uCGGcCGCGUCCGggugCCAGACaGGCcgcuGCCGg -3'
miRNA:   3'- -GUC-GUGUAGGCa---GGUCUG-CUG----CGGCa -5'
11496 3' -57.1 NC_003085.1 + 3491 0.73 0.227742
Target:  5'- -cGCGCAUCUGccgCCccaAGGCGACGCUGUa -3'
miRNA:   3'- guCGUGUAGGCa--GG---UCUGCUGCGGCA- -5'
11496 3' -57.1 NC_003085.1 + 5309 0.68 0.487859
Target:  5'- aGGCGCGcgCCGUCCuGAaGGCGaCCGa -3'
miRNA:   3'- gUCGUGUa-GGCAGGuCUgCUGC-GGCa -5'
11496 3' -57.1 NC_003085.1 + 5369 0.68 0.487859
Target:  5'- uCGGCGCGUCCgGUCCcgucaccgucgAGGCcuACGCCGc -3'
miRNA:   3'- -GUCGUGUAGG-CAGG-----------UCUGc-UGCGGCa -5'
11496 3' -57.1 NC_003085.1 + 7445 0.69 0.438264
Target:  5'- aGGCGCccUCGUCCGuGcCGACGCCGc -3'
miRNA:   3'- gUCGUGuaGGCAGGU-CuGCUGCGGCa -5'
11496 3' -57.1 NC_003085.1 + 8661 0.66 0.615579
Target:  5'- gCAGCACGguuucagcCCGUCCGcgcGCGACGCg-- -3'
miRNA:   3'- -GUCGUGUa-------GGCAGGUc--UGCUGCGgca -5'
11496 3' -57.1 NC_003085.1 + 8762 0.72 0.286606
Target:  5'- cCGGCGCGUCCagcacCCGGACGucgucccccuGCGCCGg -3'
miRNA:   3'- -GUCGUGUAGGca---GGUCUGC----------UGCGGCa -5'
11496 3' -57.1 NC_003085.1 + 10295 1.07 0.000808
Target:  5'- gCAGCACAUCCGUCCAGACGACGCCGUa -3'
miRNA:   3'- -GUCGUGUAGGCAGGUCUGCUGCGGCA- -5'
11496 3' -57.1 NC_003085.1 + 11354 0.67 0.498096
Target:  5'- aCGGCACcUCCGagaCGaugguGGCGGCGCCGg -3'
miRNA:   3'- -GUCGUGuAGGCag-GU-----CUGCUGCGGCa -5'
11496 3' -57.1 NC_003085.1 + 12243 0.68 0.477721
Target:  5'- gCGGCugGgCCG-CCAGAauugaaggccgcUGGCGCCGUg -3'
miRNA:   3'- -GUCGugUaGGCaGGUCU------------GCUGCGGCA- -5'
11496 3' -57.1 NC_003085.1 + 14245 0.67 0.529357
Target:  5'- cCGGC-CAUCggagaGUCCGGGCGcauUGCCGUc -3'
miRNA:   3'- -GUCGuGUAGg----CAGGUCUGCu--GCGGCA- -5'
11496 3' -57.1 NC_003085.1 + 16483 0.68 0.467688
Target:  5'- -cGCGCcgccuucCCGUCgCuGACGGCGCCGa -3'
miRNA:   3'- guCGUGua-----GGCAG-GuCUGCUGCGGCa -5'
11496 3' -57.1 NC_003085.1 + 18013 0.7 0.360207
Target:  5'- aCGGCGCGaggccguacgugccaUCCGUgUAGACGACGCg-- -3'
miRNA:   3'- -GUCGUGU---------------AGGCAgGUCUGCUGCGgca -5'
11496 3' -57.1 NC_003085.1 + 18312 0.66 0.615579
Target:  5'- cCGGCGCuggCCGUCCGaAgGGCaGCCGc -3'
miRNA:   3'- -GUCGUGua-GGCAGGUcUgCUG-CGGCa -5'
11496 3' -57.1 NC_003085.1 + 19719 0.69 0.409929
Target:  5'- gGGCGCGacggcggccaCGUCCugggcGACGACGCCGa -3'
miRNA:   3'- gUCGUGUag--------GCAGGu----CUGCUGCGGCa -5'
11496 3' -57.1 NC_003085.1 + 19916 0.69 0.391684
Target:  5'- aAGCACGUCCuG-CCGcACGACGCCc- -3'
miRNA:   3'- gUCGUGUAGG-CaGGUcUGCUGCGGca -5'
11496 3' -57.1 NC_003085.1 + 20070 0.66 0.56131
Target:  5'- gCGGgACAUCCGcuUCCAcGCG-CGCUGUg -3'
miRNA:   3'- -GUCgUGUAGGC--AGGUcUGCuGCGGCA- -5'
11496 3' -57.1 NC_003085.1 + 20604 0.66 0.615579
Target:  5'- gCAGCGCcgCgGaagUCGGGCGGCGCgGg -3'
miRNA:   3'- -GUCGUGuaGgCa--GGUCUGCUGCGgCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.