miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11496 5' -55.5 NC_003085.1 + 44440 0.66 0.718556
Target:  5'- uCCucGGGCGUCGUCguCUucucgGCCUGCGUCg -3'
miRNA:   3'- -GGu-CCCGCAGUAGguGA-----UGGGUGUGG- -5'
11496 5' -55.5 NC_003085.1 + 44389 0.66 0.718556
Target:  5'- cUCGGGcuguuCGUCAUCC-C-GCgCCGCACCa -3'
miRNA:   3'- -GGUCCc----GCAGUAGGuGaUG-GGUGUGG- -5'
11496 5' -55.5 NC_003085.1 + 39919 0.66 0.718556
Target:  5'- gCCAGcgucggccGCGUCGUgCACUACCagggaGCCg -3'
miRNA:   3'- -GGUCc-------CGCAGUAgGUGAUGGgug--UGG- -5'
11496 5' -55.5 NC_003085.1 + 44279 0.66 0.707884
Target:  5'- cCCAcGGCG-CcgCC-CUGCCUuccGCGCCa -3'
miRNA:   3'- -GGUcCCGCaGuaGGuGAUGGG---UGUGG- -5'
11496 5' -55.5 NC_003085.1 + 30352 0.66 0.698217
Target:  5'- gCGGGGCGcacugcggcgucuagCAUCC-C-GCCCGgGCCa -3'
miRNA:   3'- gGUCCCGCa--------------GUAGGuGaUGGGUgUGG- -5'
11496 5' -55.5 NC_003085.1 + 5689 0.66 0.69714
Target:  5'- gCUGGccGGUGUUgaGUCCAa-GCCCGCGCCc -3'
miRNA:   3'- -GGUC--CCGCAG--UAGGUgaUGGGUGUGG- -5'
11496 5' -55.5 NC_003085.1 + 7431 0.66 0.69714
Target:  5'- cCCGGcuggagagaaGGCGcccUCGUCCG-UGCCgACGCCg -3'
miRNA:   3'- -GGUC----------CCGC---AGUAGGUgAUGGgUGUGG- -5'
11496 5' -55.5 NC_003085.1 + 47514 0.66 0.696062
Target:  5'- gUCGGuGGCGaag-CCGCUGCCguucugcuuccgcCACACCa -3'
miRNA:   3'- -GGUC-CCGCaguaGGUGAUGG-------------GUGUGG- -5'
11496 5' -55.5 NC_003085.1 + 25752 0.66 0.690662
Target:  5'- gCCGGGGcCGUCuugacggaggaggCUGCUgcgcggGCCCGCugCg -3'
miRNA:   3'- -GGUCCC-GCAGua-----------GGUGA------UGGGUGugG- -5'
11496 5' -55.5 NC_003085.1 + 1191 0.66 0.686332
Target:  5'- gCCGGGGCGacCAUUgACcaaccucACCCcgGCGCCg -3'
miRNA:   3'- -GGUCCCGCa-GUAGgUGa------UGGG--UGUGG- -5'
11496 5' -55.5 NC_003085.1 + 37634 0.66 0.686332
Target:  5'- aCAGGGUGUCcUCCGCcucaGCgUcgggGCACCc -3'
miRNA:   3'- gGUCCCGCAGuAGGUGa---UGgG----UGUGG- -5'
11496 5' -55.5 NC_003085.1 + 26420 0.66 0.686332
Target:  5'- uCCGGcGGCagcuUCGcCCACUGCUCGCgaACCu -3'
miRNA:   3'- -GGUC-CCGc---AGUaGGUGAUGGGUG--UGG- -5'
11496 5' -55.5 NC_003085.1 + 17588 0.66 0.686332
Target:  5'- uUCGGGGUGaCAcgCCuGCUGCUC-CGCCg -3'
miRNA:   3'- -GGUCCCGCaGUa-GG-UGAUGGGuGUGG- -5'
11496 5' -55.5 NC_003085.1 + 48942 0.66 0.686332
Target:  5'- gCgAGGGCagcgcgCAUCCGgUccgGCCCGCGCg -3'
miRNA:   3'- -GgUCCCGca----GUAGGUgA---UGGGUGUGg -5'
11496 5' -55.5 NC_003085.1 + 43887 0.66 0.675474
Target:  5'- aCCAGGGCGUagacguggcgcaCcgUCGCgGCgCCAgGCCc -3'
miRNA:   3'- -GGUCCCGCA------------GuaGGUGaUG-GGUgUGG- -5'
11496 5' -55.5 NC_003085.1 + 15636 0.66 0.675474
Target:  5'- gCC-GGGCGgagagCGUCCacaacauuGCUGCCC-CGCg -3'
miRNA:   3'- -GGuCCCGCa----GUAGG--------UGAUGGGuGUGg -5'
11496 5' -55.5 NC_003085.1 + 32944 0.66 0.675474
Target:  5'- -aAGGGUGUCGg-UAgUGCCgACACCc -3'
miRNA:   3'- ggUCCCGCAGUagGUgAUGGgUGUGG- -5'
11496 5' -55.5 NC_003085.1 + 34233 0.67 0.664574
Target:  5'- cCCAGaguuGGCGcaaGUCCACcucGCCCACuuCCg -3'
miRNA:   3'- -GGUC----CCGCag-UAGGUGa--UGGGUGu-GG- -5'
11496 5' -55.5 NC_003085.1 + 22228 0.67 0.663483
Target:  5'- aCAGGccauuCGUCucGUCCGCguagaagaggaagUGCCCACGCUg -3'
miRNA:   3'- gGUCCc----GCAG--UAGGUG-------------AUGGGUGUGG- -5'
11496 5' -55.5 NC_003085.1 + 29478 0.67 0.653645
Target:  5'- gCGGGcGCGUacaGUCCuacugACUACCUugGCg -3'
miRNA:   3'- gGUCC-CGCAg--UAGG-----UGAUGGGugUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.