miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11496 5' -55.5 NC_003085.1 + 46684 0.67 0.60983
Target:  5'- gCCuGGaGCG-CcgCCGCUGCCUGCuuCCg -3'
miRNA:   3'- -GGuCC-CGCaGuaGGUGAUGGGUGu-GG- -5'
11496 5' -55.5 NC_003085.1 + 31342 0.7 0.482253
Target:  5'- cCCAGGcCGgcCGUCC-C-GCCCGCGCCg -3'
miRNA:   3'- -GGUCCcGCa-GUAGGuGaUGGGUGUGG- -5'
11496 5' -55.5 NC_003085.1 + 15331 0.69 0.492458
Target:  5'- gUAGGGCGUgagacgggCAUCCgACgcaacACCCuGCACCa -3'
miRNA:   3'- gGUCCCGCA--------GUAGG-UGa----UGGG-UGUGG- -5'
11496 5' -55.5 NC_003085.1 + 5360 0.69 0.506909
Target:  5'- aCCAGGGacuCGgcgCGUCCGgUcccgucaccgucgagGCCUACGCCg -3'
miRNA:   3'- -GGUCCC---GCa--GUAGGUgA---------------UGGGUGUGG- -5'
11496 5' -55.5 NC_003085.1 + 7431 0.69 0.533144
Target:  5'- cCCGGGaagacgcGCGUCuccAUCCACaUGCCCcggugggcgucGCGCCu -3'
miRNA:   3'- -GGUCC-------CGCAG---UAGGUG-AUGGG-----------UGUGG- -5'
11496 5' -55.5 NC_003085.1 + 20063 0.68 0.555549
Target:  5'- uCCuGGaGCGggaCAUCCGCU-UCCACGCg -3'
miRNA:   3'- -GGuCC-CGCa--GUAGGUGAuGGGUGUGg -5'
11496 5' -55.5 NC_003085.1 + 12073 0.68 0.566316
Target:  5'- cCCGGGGCGauucUCGUCUACggggcgggugACgCGCGCa -3'
miRNA:   3'- -GGUCCCGC----AGUAGGUGa---------UGgGUGUGg -5'
11496 5' -55.5 NC_003085.1 + 35905 0.67 0.60983
Target:  5'- cCCAGGGC--CAUgCCACggccaGCCCGCAg- -3'
miRNA:   3'- -GGUCCCGcaGUA-GGUGa----UGGGUGUgg -5'
11496 5' -55.5 NC_003085.1 + 25263 0.67 0.60983
Target:  5'- --cGGGCGUCGUcgucggcgcgcCCGuCUACCU-CACCg -3'
miRNA:   3'- gguCCCGCAGUA-----------GGU-GAUGGGuGUGG- -5'
11496 5' -55.5 NC_003085.1 + 20817 0.7 0.482253
Target:  5'- gCCGGGGUGgacgcCAUCCuggaugagGCgACCgGCGCCg -3'
miRNA:   3'- -GGUCCCGCa----GUAGG--------UGaUGGgUGUGG- -5'
11496 5' -55.5 NC_003085.1 + 32435 0.7 0.442513
Target:  5'- -gAGGGCGUCGUuggaCCGaacGCCCGCgGCCu -3'
miRNA:   3'- ggUCCCGCAGUA----GGUga-UGGGUG-UGG- -5'
11496 5' -55.5 NC_003085.1 + 45459 0.71 0.412091
Target:  5'- cCCGGGGCGcUCAUCCAgucgucgUUGuCCUucgugauGCACCa -3'
miRNA:   3'- -GGUCCCGC-AGUAGGU-------GAU-GGG-------UGUGG- -5'
11496 5' -55.5 NC_003085.1 + 16516 0.77 0.186136
Target:  5'- -aAGGGUGUCGg-CACUACCgACACCc -3'
miRNA:   3'- ggUCCCGCAGUagGUGAUGGgUGUGG- -5'
11496 5' -55.5 NC_003085.1 + 17060 0.75 0.236087
Target:  5'- uCgAGGGCGUCGagaaguaCgGCcGCCCACACCa -3'
miRNA:   3'- -GgUCCCGCAGUa------GgUGaUGGGUGUGG- -5'
11496 5' -55.5 NC_003085.1 + 11553 0.73 0.327453
Target:  5'- gCCGGGGCcaugCG-CCAacgcaccgucCUGCCCGCGCCu -3'
miRNA:   3'- -GGUCCCGca--GUaGGU----------GAUGGGUGUGG- -5'
11496 5' -55.5 NC_003085.1 + 38831 0.73 0.327453
Target:  5'- gCAGGGCG-CAcugCCGCgucguCCCACugCg -3'
miRNA:   3'- gGUCCCGCaGUa--GGUGau---GGGUGugG- -5'
11496 5' -55.5 NC_003085.1 + 11793 0.73 0.327453
Target:  5'- uCC-GGGCGU-GUCgGCUGCCCcauCGCCg -3'
miRNA:   3'- -GGuCCCGCAgUAGgUGAUGGGu--GUGG- -5'
11496 5' -55.5 NC_003085.1 + 49233 0.72 0.335472
Target:  5'- cUCGaGGCGcCucuUCCACUGCCCGCuCCg -3'
miRNA:   3'- -GGUcCCGCaGu--AGGUGAUGGGUGuGG- -5'
11496 5' -55.5 NC_003085.1 + 7908 0.72 0.360384
Target:  5'- gUCGGGGCGagcgCGUCCugUcgGCgUGCACCa -3'
miRNA:   3'- -GGUCCCGCa---GUAGGugA--UGgGUGUGG- -5'
11496 5' -55.5 NC_003085.1 + 39162 0.72 0.36897
Target:  5'- gCUAcGGCGUCGUCUggacggauguGCUGCCuUACGCCg -3'
miRNA:   3'- -GGUcCCGCAGUAGG----------UGAUGG-GUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.