Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11497 | 5' | -58 | NC_003085.1 | + | 31307 | 0.66 | 0.560164 |
Target: 5'- uGGCGCUucuuccgccucgGGUCCg---UCACCUUGUc -3' miRNA: 3'- gCCGCGA------------CCAGGaguaGGUGGAACGc -5' |
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11497 | 5' | -58 | NC_003085.1 | + | 30636 | 0.66 | 0.560164 |
Target: 5'- gCGGCGUaGuacUCCUCAgggUCCACCUUcGCc -3' miRNA: 3'- -GCCGCGaCc--AGGAGU---AGGUGGAA-CGc -5' |
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11497 | 5' | -58 | NC_003085.1 | + | 8583 | 0.66 | 0.549491 |
Target: 5'- gCGGCGCaGGaugcccaccUCCUUGUCCACgCUgGCc -3' miRNA: 3'- -GCCGCGaCC---------AGGAGUAGGUG-GAaCGc -5' |
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11497 | 5' | -58 | NC_003085.1 | + | 36773 | 0.66 | 0.549491 |
Target: 5'- gCGGCG-UGG-CgUCAUCCACCcggagGCa -3' miRNA: 3'- -GCCGCgACCaGgAGUAGGUGGaa---CGc -5' |
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11497 | 5' | -58 | NC_003085.1 | + | 40626 | 0.66 | 0.538881 |
Target: 5'- aCGGcCGCUGccGUCCUCGUCgC-CCUgacgcuggcUGCGc -3' miRNA: 3'- -GCC-GCGAC--CAGGAGUAG-GuGGA---------ACGC- -5' |
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11497 | 5' | -58 | NC_003085.1 | + | 7992 | 0.66 | 0.517882 |
Target: 5'- uGGCGC-GGUaCUUCAcCCgcgccccaGCCUUGCGc -3' miRNA: 3'- gCCGCGaCCA-GGAGUaGG--------UGGAACGC- -5' |
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11497 | 5' | -58 | NC_003085.1 | + | 47491 | 0.66 | 0.517882 |
Target: 5'- uGGCGCUGccgcguUCCgUGUCCGCCacUGCGa -3' miRNA: 3'- gCCGCGACc-----AGGaGUAGGUGGa-ACGC- -5' |
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11497 | 5' | -58 | NC_003085.1 | + | 17547 | 0.66 | 0.507504 |
Target: 5'- gGGCuGCUGcucccgugCCUCGUCCGCCUcGUu -3' miRNA: 3'- gCCG-CGACca------GGAGUAGGUGGAaCGc -5' |
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11497 | 5' | -58 | NC_003085.1 | + | 35780 | 0.67 | 0.487021 |
Target: 5'- gCGGCGCgacggccgGuGUCCUUGUCCAUggggUUGCGc -3' miRNA: 3'- -GCCGCGa-------C-CAGGAGUAGGUGg---AACGC- -5' |
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11497 | 5' | -58 | NC_003085.1 | + | 33612 | 0.67 | 0.476927 |
Target: 5'- uCGGCGCUcaa-CUCAaUCGCCUUGCa -3' miRNA: 3'- -GCCGCGAccagGAGUaGGUGGAACGc -5' |
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11497 | 5' | -58 | NC_003085.1 | + | 23081 | 0.68 | 0.428112 |
Target: 5'- gGGCGCUcagcGGcCCgagcaacggCAUCCGCUgcgUGCGg -3' miRNA: 3'- gCCGCGA----CCaGGa--------GUAGGUGGa--ACGC- -5' |
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11497 | 5' | -58 | NC_003085.1 | + | 36170 | 0.68 | 0.409428 |
Target: 5'- gGGCucGCUGGggCCUCcgauGUUCGCCgUGCGg -3' miRNA: 3'- gCCG--CGACCa-GGAG----UAGGUGGaACGC- -5' |
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11497 | 5' | -58 | NC_003085.1 | + | 3814 | 0.68 | 0.409428 |
Target: 5'- aCGGUGCUGGgCCUCAcagCCAaacaggUGCGc -3' miRNA: 3'- -GCCGCGACCaGGAGUa--GGUgga---ACGC- -5' |
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11497 | 5' | -58 | NC_003085.1 | + | 42831 | 0.68 | 0.409428 |
Target: 5'- cCGGCGCUGGcggcgcgcgUCUUCGUcuccCCACCUcccgGCc -3' miRNA: 3'- -GCCGCGACC---------AGGAGUA----GGUGGAa---CGc -5' |
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11497 | 5' | -58 | NC_003085.1 | + | 48257 | 0.69 | 0.373626 |
Target: 5'- uGGUGauggGGUCCUUGUUCACCUUcgacGCGc -3' miRNA: 3'- gCCGCga--CCAGGAGUAGGUGGAA----CGC- -5' |
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11497 | 5' | -58 | NC_003085.1 | + | 39689 | 0.69 | 0.365013 |
Target: 5'- aGGCGCUGGaggcucgUCUC-UCCGCCguugagGCGc -3' miRNA: 3'- gCCGCGACCa------GGAGuAGGUGGaa----CGC- -5' |
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11497 | 5' | -58 | NC_003085.1 | + | 28630 | 0.69 | 0.365013 |
Target: 5'- uCGGCGCcGGUcgCCUCAUCCAggaugGCGu -3' miRNA: 3'- -GCCGCGaCCA--GGAGUAGGUggaa-CGC- -5' |
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11497 | 5' | -58 | NC_003085.1 | + | 42123 | 0.69 | 0.365013 |
Target: 5'- gGGCGCgUGuagcccgcGUCCUCAgCCGCCUccGCGa -3' miRNA: 3'- gCCGCG-AC--------CAGGAGUaGGUGGAa-CGC- -5' |
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11497 | 5' | -58 | NC_003085.1 | + | 18746 | 0.69 | 0.365013 |
Target: 5'- gGGaCGCcGGUCCgcuUCCcCCUUGCGc -3' miRNA: 3'- gCC-GCGaCCAGGaguAGGuGGAACGC- -5' |
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11497 | 5' | -58 | NC_003085.1 | + | 49127 | 0.69 | 0.356539 |
Target: 5'- cCGGUGCUcagucGUCCUCGUCCucuCCgaGCa -3' miRNA: 3'- -GCCGCGAc----CAGGAGUAGGu--GGaaCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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