Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11497 | 5' | -58 | NC_003085.1 | + | 9734 | 1.08 | 0.000561 |
Target: 5'- cCGGCGCUGGUCCUCAUCCACCUUGCGc -3' miRNA: 3'- -GCCGCGACCAGGAGUAGGUGGAACGC- -5' |
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11497 | 5' | -58 | NC_003085.1 | + | 40121 | 0.75 | 0.140801 |
Target: 5'- uCGGCuGCUGGUCCUgG-CCGCCgcGCGu -3' miRNA: 3'- -GCCG-CGACCAGGAgUaGGUGGaaCGC- -5' |
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11497 | 5' | -58 | NC_003085.1 | + | 40394 | 0.75 | 0.161369 |
Target: 5'- uGGCGCUGGccggcauccaacUCCUCA-CCACCUU-CGg -3' miRNA: 3'- gCCGCGACC------------AGGAGUaGGUGGAAcGC- -5' |
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11497 | 5' | -58 | NC_003085.1 | + | 2306 | 0.74 | 0.179733 |
Target: 5'- aCGGCGCUGGccugCCUCG-CCACCggccGCc -3' miRNA: 3'- -GCCGCGACCa---GGAGUaGGUGGaa--CGc -5' |
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11497 | 5' | -58 | NC_003085.1 | + | 29180 | 0.72 | 0.24626 |
Target: 5'- aCGGCcUUGGgcuucgCCUCAUCCGCCggagGCa -3' miRNA: 3'- -GCCGcGACCa-----GGAGUAGGUGGaa--CGc -5' |
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11497 | 5' | -58 | NC_003085.1 | + | 48420 | 0.71 | 0.293801 |
Target: 5'- gCGGCGCUGG-CUUCcUCCGCauggacgGCGa -3' miRNA: 3'- -GCCGCGACCaGGAGuAGGUGgaa----CGC- -5' |
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11497 | 5' | -58 | NC_003085.1 | + | 36525 | 0.7 | 0.319361 |
Target: 5'- gCGGCGCggacGGUCCUCAgaaaucgauucuggCgGCCgugGCGg -3' miRNA: 3'- -GCCGCGa---CCAGGAGUa-------------GgUGGaa-CGC- -5' |
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11497 | 5' | -58 | NC_003085.1 | + | 41855 | 0.7 | 0.331954 |
Target: 5'- cCGGCGCUGGUCCacc-UCGCggUGCGc -3' miRNA: 3'- -GCCGCGACCAGGaguaGGUGgaACGC- -5' |
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11497 | 5' | -58 | NC_003085.1 | + | 11972 | 0.7 | 0.340009 |
Target: 5'- gCGGCGUgagcggauUGGUCCUC-UUgGCCU-GCGg -3' miRNA: 3'- -GCCGCG--------ACCAGGAGuAGgUGGAaCGC- -5' |
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11497 | 5' | -58 | NC_003085.1 | + | 28297 | 0.69 | 0.348204 |
Target: 5'- aCGGCGCUGuaGcCCUCcacguaccaGUCCACCUUcCGg -3' miRNA: 3'- -GCCGCGAC--CaGGAG---------UAGGUGGAAcGC- -5' |
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11497 | 5' | -58 | NC_003085.1 | + | 49127 | 0.69 | 0.356539 |
Target: 5'- cCGGUGCUcagucGUCCUCGUCCucuCCgaGCa -3' miRNA: 3'- -GCCGCGAc----CAGGAGUAGGu--GGaaCGc -5' |
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11497 | 5' | -58 | NC_003085.1 | + | 39689 | 0.69 | 0.365013 |
Target: 5'- aGGCGCUGGaggcucgUCUC-UCCGCCguugagGCGc -3' miRNA: 3'- gCCGCGACCa------GGAGuAGGUGGaa----CGC- -5' |
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11497 | 5' | -58 | NC_003085.1 | + | 42123 | 0.69 | 0.365013 |
Target: 5'- gGGCGCgUGuagcccgcGUCCUCAgCCGCCUccGCGa -3' miRNA: 3'- gCCGCG-AC--------CAGGAGUaGGUGGAa-CGC- -5' |
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11497 | 5' | -58 | NC_003085.1 | + | 28630 | 0.69 | 0.365013 |
Target: 5'- uCGGCGCcGGUcgCCUCAUCCAggaugGCGu -3' miRNA: 3'- -GCCGCGaCCA--GGAGUAGGUggaa-CGC- -5' |
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11497 | 5' | -58 | NC_003085.1 | + | 18746 | 0.69 | 0.365013 |
Target: 5'- gGGaCGCcGGUCCgcuUCCcCCUUGCGc -3' miRNA: 3'- gCC-GCGaCCAGGaguAGGuGGAACGC- -5' |
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11497 | 5' | -58 | NC_003085.1 | + | 48257 | 0.69 | 0.373626 |
Target: 5'- uGGUGauggGGUCCUUGUUCACCUUcgacGCGc -3' miRNA: 3'- gCCGCga--CCAGGAGUAGGUGGAA----CGC- -5' |
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11497 | 5' | -58 | NC_003085.1 | + | 36170 | 0.68 | 0.409428 |
Target: 5'- gGGCucGCUGGggCCUCcgauGUUCGCCgUGCGg -3' miRNA: 3'- gCCG--CGACCa-GGAG----UAGGUGGaACGC- -5' |
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11497 | 5' | -58 | NC_003085.1 | + | 42831 | 0.68 | 0.409428 |
Target: 5'- cCGGCGCUGGcggcgcgcgUCUUCGUcuccCCACCUcccgGCc -3' miRNA: 3'- -GCCGCGACC---------AGGAGUA----GGUGGAa---CGc -5' |
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11497 | 5' | -58 | NC_003085.1 | + | 3814 | 0.68 | 0.409428 |
Target: 5'- aCGGUGCUGGgCCUCAcagCCAaacaggUGCGc -3' miRNA: 3'- -GCCGCGACCaGGAGUa--GGUgga---ACGC- -5' |
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11497 | 5' | -58 | NC_003085.1 | + | 23081 | 0.68 | 0.428112 |
Target: 5'- gGGCGCUcagcGGcCCgagcaacggCAUCCGCUgcgUGCGg -3' miRNA: 3'- gCCGCGA----CCaGGa--------GUAGGUGGa--ACGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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