miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11497 5' -58 NC_003085.1 + 40121 0.75 0.140801
Target:  5'- uCGGCuGCUGGUCCUgG-CCGCCgcGCGu -3'
miRNA:   3'- -GCCG-CGACCAGGAgUaGGUGGaaCGC- -5'
11497 5' -58 NC_003085.1 + 40626 0.66 0.538881
Target:  5'- aCGGcCGCUGccGUCCUCGUCgC-CCUgacgcuggcUGCGc -3'
miRNA:   3'- -GCC-GCGAC--CAGGAGUAG-GuGGA---------ACGC- -5'
11497 5' -58 NC_003085.1 + 47491 0.66 0.517882
Target:  5'- uGGCGCUGccgcguUCCgUGUCCGCCacUGCGa -3'
miRNA:   3'- gCCGCGACc-----AGGaGUAGGUGGa-ACGC- -5'
11497 5' -58 NC_003085.1 + 35780 0.67 0.487021
Target:  5'- gCGGCGCgacggccgGuGUCCUUGUCCAUggggUUGCGc -3'
miRNA:   3'- -GCCGCGa-------C-CAGGAGUAGGUGg---AACGC- -5'
11497 5' -58 NC_003085.1 + 42831 0.68 0.409428
Target:  5'- cCGGCGCUGGcggcgcgcgUCUUCGUcuccCCACCUcccgGCc -3'
miRNA:   3'- -GCCGCGACC---------AGGAGUA----GGUGGAa---CGc -5'
11497 5' -58 NC_003085.1 + 39689 0.69 0.365013
Target:  5'- aGGCGCUGGaggcucgUCUC-UCCGCCguugagGCGc -3'
miRNA:   3'- gCCGCGACCa------GGAGuAGGUGGaa----CGC- -5'
11497 5' -58 NC_003085.1 + 49127 0.69 0.356539
Target:  5'- cCGGUGCUcagucGUCCUCGUCCucuCCgaGCa -3'
miRNA:   3'- -GCCGCGAc----CAGGAGUAGGu--GGaaCGc -5'
11497 5' -58 NC_003085.1 + 11972 0.7 0.340009
Target:  5'- gCGGCGUgagcggauUGGUCCUC-UUgGCCU-GCGg -3'
miRNA:   3'- -GCCGCG--------ACCAGGAGuAGgUGGAaCGC- -5'
11497 5' -58 NC_003085.1 + 41855 0.7 0.331954
Target:  5'- cCGGCGCUGGUCCacc-UCGCggUGCGc -3'
miRNA:   3'- -GCCGCGACCAGGaguaGGUGgaACGC- -5'
11497 5' -58 NC_003085.1 + 48420 0.71 0.293801
Target:  5'- gCGGCGCUGG-CUUCcUCCGCauggacgGCGa -3'
miRNA:   3'- -GCCGCGACCaGGAGuAGGUGgaa----CGC- -5'
11497 5' -58 NC_003085.1 + 2306 0.74 0.179733
Target:  5'- aCGGCGCUGGccugCCUCG-CCACCggccGCc -3'
miRNA:   3'- -GCCGCGACCa---GGAGUaGGUGGaa--CGc -5'
11497 5' -58 NC_003085.1 + 40394 0.75 0.161369
Target:  5'- uGGCGCUGGccggcauccaacUCCUCA-CCACCUU-CGg -3'
miRNA:   3'- gCCGCGACC------------AGGAGUaGGUGGAAcGC- -5'
11497 5' -58 NC_003085.1 + 23081 0.68 0.428112
Target:  5'- gGGCGCUcagcGGcCCgagcaacggCAUCCGCUgcgUGCGg -3'
miRNA:   3'- gCCGCGA----CCaGGa--------GUAGGUGGa--ACGC- -5'
11497 5' -58 NC_003085.1 + 33612 0.67 0.476927
Target:  5'- uCGGCGCUcaa-CUCAaUCGCCUUGCa -3'
miRNA:   3'- -GCCGCGAccagGAGUaGGUGGAACGc -5'
11497 5' -58 NC_003085.1 + 17547 0.66 0.507504
Target:  5'- gGGCuGCUGcucccgugCCUCGUCCGCCUcGUu -3'
miRNA:   3'- gCCG-CGACca------GGAGUAGGUGGAaCGc -5'
11497 5' -58 NC_003085.1 + 7992 0.66 0.517882
Target:  5'- uGGCGC-GGUaCUUCAcCCgcgccccaGCCUUGCGc -3'
miRNA:   3'- gCCGCGaCCA-GGAGUaGG--------UGGAACGC- -5'
11497 5' -58 NC_003085.1 + 8583 0.66 0.549491
Target:  5'- gCGGCGCaGGaugcccaccUCCUUGUCCACgCUgGCc -3'
miRNA:   3'- -GCCGCGaCC---------AGGAGUAGGUG-GAaCGc -5'
11497 5' -58 NC_003085.1 + 36773 0.66 0.549491
Target:  5'- gCGGCG-UGG-CgUCAUCCACCcggagGCa -3'
miRNA:   3'- -GCCGCgACCaGgAGUAGGUGGaa---CGc -5'
11497 5' -58 NC_003085.1 + 30636 0.66 0.560164
Target:  5'- gCGGCGUaGuacUCCUCAgggUCCACCUUcGCc -3'
miRNA:   3'- -GCCGCGaCc--AGGAGU---AGGUGGAA-CGc -5'
11497 5' -58 NC_003085.1 + 9734 1.08 0.000561
Target:  5'- cCGGCGCUGGUCCUCAUCCACCUUGCGc -3'
miRNA:   3'- -GCCGCGACCAGGAGUAGGUGGAACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.