miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11498 3' -53 NC_003085.1 + 1584 0.67 0.789192
Target:  5'- cGGCGCG-GCGu-ACgCGUGCCGUg-- -3'
miRNA:   3'- -CCGUGCuCGCuuUGaGCACGGUAgcc -5'
11498 3' -53 NC_003085.1 + 1780 0.68 0.748342
Target:  5'- cGUugGAGUGGGACagGUGgcCCGUUGGc -3'
miRNA:   3'- cCGugCUCGCUUUGagCAC--GGUAGCC- -5'
11498 3' -53 NC_003085.1 + 2085 0.68 0.705568
Target:  5'- cGCgACGAGCGcAGCcgccgcaccUCGgcGCCAUCGGc -3'
miRNA:   3'- cCG-UGCUCGCuUUG---------AGCa-CGGUAGCC- -5'
11498 3' -53 NC_003085.1 + 3356 0.66 0.827382
Target:  5'- cGCAUGGGUGAgccagaauccGACccagCGgcucGCCGUCGGu -3'
miRNA:   3'- cCGUGCUCGCU----------UUGa---GCa---CGGUAGCC- -5'
11498 3' -53 NC_003085.1 + 4525 0.67 0.779201
Target:  5'- gGGCACG-GCGAuACcuccCGUGCgGUCu- -3'
miRNA:   3'- -CCGUGCuCGCUuUGa---GCACGgUAGcc -5'
11498 3' -53 NC_003085.1 + 4760 0.67 0.758764
Target:  5'- cGGUugGAGUGAcGACUUucgGCUcUCGGg -3'
miRNA:   3'- -CCGugCUCGCU-UUGAGca-CGGuAGCC- -5'
11498 3' -53 NC_003085.1 + 5284 0.67 0.802898
Target:  5'- aGCACGGGCGAAgaagacgaagugaagGCgCGcGCCGUCc- -3'
miRNA:   3'- cCGUGCUCGCUU---------------UGaGCaCGGUAGcc -5'
11498 3' -53 NC_003085.1 + 5660 0.67 0.758764
Target:  5'- uGCGCGAGCgccgcggaGAGAUUCcG-GCCAUuCGGg -3'
miRNA:   3'- cCGUGCUCG--------CUUUGAG-CaCGGUA-GCC- -5'
11498 3' -53 NC_003085.1 + 7407 0.66 0.808664
Target:  5'- uGGCACGAGUccGACUgGgGCCcuccCGGg -3'
miRNA:   3'- -CCGUGCUCGcuUUGAgCaCGGua--GCC- -5'
11498 3' -53 NC_003085.1 + 7716 0.68 0.7164
Target:  5'- uGGC-CGGGCGuccgagcaggaAAACUCGgUGCCGaagUUGGa -3'
miRNA:   3'- -CCGuGCUCGC-----------UUUGAGC-ACGGU---AGCC- -5'
11498 3' -53 NC_003085.1 + 8840 0.66 0.853868
Target:  5'- uGCGCGAGCaggaGggGCggccaugaCGUG-CAUCGGc -3'
miRNA:   3'- cCGUGCUCG----CuuUGa-------GCACgGUAGCC- -5'
11498 3' -53 NC_003085.1 + 9146 0.7 0.595065
Target:  5'- cGGCACcuGGCGGAGCUCGccGCCG-CGc -3'
miRNA:   3'- -CCGUGc-UCGCUUUGAGCa-CGGUaGCc -5'
11498 3' -53 NC_003085.1 + 9390 1.14 0.000771
Target:  5'- cGGCACGAGCGAAACUCGUGCCAUCGGg -3'
miRNA:   3'- -CCGUGCUCGCUUUGAGCACGGUAGCC- -5'
11498 3' -53 NC_003085.1 + 17375 0.66 0.827382
Target:  5'- cGCcaGCGAGCaGGACUCGUGUUggCGa -3'
miRNA:   3'- cCG--UGCUCGcUUUGAGCACGGuaGCc -5'
11498 3' -53 NC_003085.1 + 18014 0.66 0.845264
Target:  5'- cGGCGCGAGgcCGua---CGUGCCAUCc- -3'
miRNA:   3'- -CCGUGCUC--GCuuugaGCACGGUAGcc -5'
11498 3' -53 NC_003085.1 + 18118 0.74 0.408423
Target:  5'- cGGCGCGGGCGGGACggcCG-GCC-UgGGa -3'
miRNA:   3'- -CCGUGCUCGCUUUGa--GCaCGGuAgCC- -5'
11498 3' -53 NC_003085.1 + 19061 0.71 0.573033
Target:  5'- cGGCGCGcGGCGGAGCagGcGCCGggccCGGa -3'
miRNA:   3'- -CCGUGC-UCGCUUUGagCaCGGUa---GCC- -5'
11498 3' -53 NC_003085.1 + 19199 0.66 0.845264
Target:  5'- uGGCACGAGCaGGACUUcaccuucaCCGUCGa -3'
miRNA:   3'- -CCGUGCUCGcUUUGAGcac-----GGUAGCc -5'
11498 3' -53 NC_003085.1 + 21613 0.68 0.715321
Target:  5'- uGGCGCGAGCGAcccgcgcGAgaCG-GCCAU-GGc -3'
miRNA:   3'- -CCGUGCUCGCU-------UUgaGCaCGGUAgCC- -5'
11498 3' -53 NC_003085.1 + 23783 0.69 0.650539
Target:  5'- cGGCAUGGGCGAA-UUCGU-CCGgcCGGu -3'
miRNA:   3'- -CCGUGCUCGCUUuGAGCAcGGUa-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.