Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11498 | 3' | -53 | NC_003085.1 | + | 5660 | 0.67 | 0.758764 |
Target: 5'- uGCGCGAGCgccgcggaGAGAUUCcG-GCCAUuCGGg -3' miRNA: 3'- cCGUGCUCG--------CUUUGAG-CaCGGUA-GCC- -5' |
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11498 | 3' | -53 | NC_003085.1 | + | 4760 | 0.67 | 0.758764 |
Target: 5'- cGGUugGAGUGAcGACUUucgGCUcUCGGg -3' miRNA: 3'- -CCGugCUCGCU-UUGAGca-CGGuAGCC- -5' |
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11498 | 3' | -53 | NC_003085.1 | + | 1780 | 0.68 | 0.748342 |
Target: 5'- cGUugGAGUGGGACagGUGgcCCGUUGGc -3' miRNA: 3'- cCGugCUCGCUUUGagCAC--GGUAGCC- -5' |
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11498 | 3' | -53 | NC_003085.1 | + | 31866 | 0.68 | 0.737799 |
Target: 5'- aGGCACG-GCGGAGCagcaggCGUGUCAccccgaagcCGGa -3' miRNA: 3'- -CCGUGCuCGCUUUGa-----GCACGGUa--------GCC- -5' |
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11498 | 3' | -53 | NC_003085.1 | + | 48750 | 0.68 | 0.728218 |
Target: 5'- aGGCGCGGGUGGAccuGCUCaggccgcgcccgagGCCGgacgCGGg -3' miRNA: 3'- -CCGUGCUCGCUU---UGAGca------------CGGUa---GCC- -5' |
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11498 | 3' | -53 | NC_003085.1 | + | 7716 | 0.68 | 0.7164 |
Target: 5'- uGGC-CGGGCGuccgagcaggaAAACUCGgUGCCGaagUUGGa -3' miRNA: 3'- -CCGuGCUCGC-----------UUUGAGC-ACGGU---AGCC- -5' |
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11498 | 3' | -53 | NC_003085.1 | + | 21613 | 0.68 | 0.715321 |
Target: 5'- uGGCGCGAGCGAcccgcgcGAgaCG-GCCAU-GGc -3' miRNA: 3'- -CCGUGCUCGCU-------UUgaGCaCGGUAgCC- -5' |
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11498 | 3' | -53 | NC_003085.1 | + | 42057 | 0.68 | 0.705568 |
Target: 5'- gGGCcCcAGUcGGACUCGUGCCAguucacgCGGg -3' miRNA: 3'- -CCGuGcUCGcUUUGAGCACGGUa------GCC- -5' |
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11498 | 3' | -53 | NC_003085.1 | + | 2085 | 0.68 | 0.705568 |
Target: 5'- cGCgACGAGCGcAGCcgccgcaccUCGgcGCCAUCGGc -3' miRNA: 3'- cCG-UGCUCGCuUUG---------AGCa-CGGUAGCC- -5' |
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11498 | 3' | -53 | NC_003085.1 | + | 26722 | 0.69 | 0.694663 |
Target: 5'- cGGCGCGGGUgucGGAGCcgaGUGCUucUCGGc -3' miRNA: 3'- -CCGUGCUCG---CUUUGag-CACGGu-AGCC- -5' |
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11498 | 3' | -53 | NC_003085.1 | + | 26673 | 0.69 | 0.661623 |
Target: 5'- gGGCGgGAGCGGccguuGC-CGcUGCCGUCGc -3' miRNA: 3'- -CCGUgCUCGCUu----UGaGC-ACGGUAGCc -5' |
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11498 | 3' | -53 | NC_003085.1 | + | 23783 | 0.69 | 0.650539 |
Target: 5'- cGGCAUGGGCGAA-UUCGU-CCGgcCGGu -3' miRNA: 3'- -CCGUGCUCGCUUuGAGCAcGGUa-GCC- -5' |
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11498 | 3' | -53 | NC_003085.1 | + | 38202 | 0.7 | 0.621666 |
Target: 5'- cGGCAacuCGGGCGGcgguGGCUCGUGCaCucucgacggcagcacGUCGGc -3' miRNA: 3'- -CCGU---GCUCGCU----UUGAGCACG-G---------------UAGCC- -5' |
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11498 | 3' | -53 | NC_003085.1 | + | 31451 | 0.7 | 0.595065 |
Target: 5'- uGGCACGuaCGGc-CUCGcGCCGUCGGa -3' miRNA: 3'- -CCGUGCucGCUuuGAGCaCGGUAGCC- -5' |
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11498 | 3' | -53 | NC_003085.1 | + | 9146 | 0.7 | 0.595065 |
Target: 5'- cGGCACcuGGCGGAGCUCGccGCCG-CGc -3' miRNA: 3'- -CCGUGc-UCGCUUUGAGCa-CGGUaGCc -5' |
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11498 | 3' | -53 | NC_003085.1 | + | 19061 | 0.71 | 0.573033 |
Target: 5'- cGGCGCGcGGCGGAGCagGcGCCGggccCGGa -3' miRNA: 3'- -CCGUGC-UCGCUUUGagCaCGGUa---GCC- -5' |
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11498 | 3' | -53 | NC_003085.1 | + | 36600 | 0.71 | 0.540374 |
Target: 5'- gGGCACGGGUGGcggaagggcAACUugCGUGgCAUUGGc -3' miRNA: 3'- -CCGUGCUCGCU---------UUGA--GCACgGUAGCC- -5' |
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11498 | 3' | -53 | NC_003085.1 | + | 34191 | 0.73 | 0.437148 |
Target: 5'- gGGCGCG-GCGGgugAGCUCG-GCCG-CGGc -3' miRNA: 3'- -CCGUGCuCGCU---UUGAGCaCGGUaGCC- -5' |
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11498 | 3' | -53 | NC_003085.1 | + | 48607 | 0.73 | 0.417867 |
Target: 5'- aGGCGCGAGCGAugcGCUUGgcGCCGUa-- -3' miRNA: 3'- -CCGUGCUCGCUu--UGAGCa-CGGUAgcc -5' |
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11498 | 3' | -53 | NC_003085.1 | + | 18118 | 0.74 | 0.408423 |
Target: 5'- cGGCGCGGGCGGGACggcCG-GCC-UgGGa -3' miRNA: 3'- -CCGUGCUCGCUUUGa--GCaCGGuAgCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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