miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11500 3' -56.3 NC_003085.1 + 11298 0.66 0.625209
Target:  5'- aCACCuGcGCCGcGGCGGggagcgccaccaCCAACGCCa -3'
miRNA:   3'- aGUGG-CaCGGUcUCGUCa-----------GGUUGCGG- -5'
11500 3' -56.3 NC_003085.1 + 11611 0.7 0.373001
Target:  5'- -gGCCG-GCCAGcGCAGg-CAGCGCUa -3'
miRNA:   3'- agUGGCaCGGUCuCGUCagGUUGCGG- -5'
11500 3' -56.3 NC_003085.1 + 12336 0.66 0.605392
Target:  5'- gUCGCCGUGCCc-GGCGugaCggUGCCa -3'
miRNA:   3'- -AGUGGCACGGucUCGUcagGuuGCGG- -5'
11500 3' -56.3 NC_003085.1 + 12790 0.68 0.497985
Target:  5'- cCGCCGuUGUCGG-GCAGgugcUCC-ACGCCc -3'
miRNA:   3'- aGUGGC-ACGGUCuCGUC----AGGuUGCGG- -5'
11500 3' -56.3 NC_003085.1 + 14028 0.66 0.637332
Target:  5'- gCAUCGcGCCGacauuggaggcGAGCGggaugacGUCCAACGUCg -3'
miRNA:   3'- aGUGGCaCGGU-----------CUCGU-------CAGGUUGCGG- -5'
11500 3' -56.3 NC_003085.1 + 14201 0.67 0.583462
Target:  5'- uUCAgaaGUGCCugcAGAGcCGGUCCGAaugcaGCCa -3'
miRNA:   3'- -AGUgg-CACGG---UCUC-GUCAGGUUg----CGG- -5'
11500 3' -56.3 NC_003085.1 + 14759 0.68 0.477454
Target:  5'- cCGCCGUgGCCAu-GCAa-CCGGCGCCu -3'
miRNA:   3'- aGUGGCA-CGGUcuCGUcaGGUUGCGG- -5'
11500 3' -56.3 NC_003085.1 + 15031 0.66 0.616395
Target:  5'- cCGCUGgGCCGGcccaagccGCAGcCCAGgGCCa -3'
miRNA:   3'- aGUGGCaCGGUCu-------CGUCaGGUUgCGG- -5'
11500 3' -56.3 NC_003085.1 + 15189 0.68 0.487669
Target:  5'- -gGCUGaGCCGGuGCg--CCAGCGCCg -3'
miRNA:   3'- agUGGCaCGGUCuCGucaGGUUGCGG- -5'
11500 3' -56.3 NC_003085.1 + 16600 0.68 0.487669
Target:  5'- gCGCUGgGCCucccGGGCGGUCCcgcGGCGCg -3'
miRNA:   3'- aGUGGCaCGGu---CUCGUCAGG---UUGCGg -5'
11500 3' -56.3 NC_003085.1 + 17440 0.71 0.322946
Target:  5'- aUCACCGcGCCGGuacGCAcgaguuGUCCAagggaggcaGCGCCa -3'
miRNA:   3'- -AGUGGCaCGGUCu--CGU------CAGGU---------UGCGG- -5'
11500 3' -56.3 NC_003085.1 + 17625 0.69 0.457351
Target:  5'- gUCG-CGUGCCGGAGCA--CCuGCGCa -3'
miRNA:   3'- -AGUgGCACGGUCUCGUcaGGuUGCGg -5'
11500 3' -56.3 NC_003085.1 + 18214 0.68 0.477454
Target:  5'- cCAUCGUGCCAGGGaCAaUCaCGcgcucaggcgacACGCCg -3'
miRNA:   3'- aGUGGCACGGUCUC-GUcAG-GU------------UGCGG- -5'
11500 3' -56.3 NC_003085.1 + 18647 0.67 0.573643
Target:  5'- uUCGCCGUGCCcccgcgcaucugugcGAGCGcacUCCugcugaggguGACGCCg -3'
miRNA:   3'- -AGUGGCACGGu--------------CUCGUc--AGG----------UUGCGG- -5'
11500 3' -56.3 NC_003085.1 + 19089 0.7 0.409181
Target:  5'- gCACCGaugGCCcGGGCGGgaugCUAgACGCCg -3'
miRNA:   3'- aGUGGCa--CGGuCUCGUCa---GGU-UGCGG- -5'
11500 3' -56.3 NC_003085.1 + 19949 0.66 0.631822
Target:  5'- aCGCUggugacggcuccucaGUGCUGGAGCAGUUCcugGCCa -3'
miRNA:   3'- aGUGG---------------CACGGUCUCGUCAGGuugCGG- -5'
11500 3' -56.3 NC_003085.1 + 20846 0.69 0.418563
Target:  5'- -gGCCG-GCCGcAGCAG-CgAGCGCCa -3'
miRNA:   3'- agUGGCaCGGUcUCGUCaGgUUGCGG- -5'
11500 3' -56.3 NC_003085.1 + 21401 0.68 0.529489
Target:  5'- cUCACCaucgGCCGccuGCuGUCCGAgGCCg -3'
miRNA:   3'- -AGUGGca--CGGUcu-CGuCAGGUUgCGG- -5'
11500 3' -56.3 NC_003085.1 + 21921 0.69 0.467347
Target:  5'- gUCACCGccGCCGGAGauggccacgaGGgagucaucaugCCGGCGCCg -3'
miRNA:   3'- -AGUGGCa-CGGUCUCg---------UCa----------GGUUGCGG- -5'
11500 3' -56.3 NC_003085.1 + 22166 0.67 0.58237
Target:  5'- uUCACCGacGCCAGuccccugcgcgacAGCGGUCCAGguaucCGUa -3'
miRNA:   3'- -AGUGGCa-CGGUC-------------UCGUCAGGUU-----GCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.