miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11500 3' -56.3 NC_003085.1 + 11064 0.66 0.594411
Target:  5'- cCAUCGUGCCGGuGCccGUaCUGGgGCCa -3'
miRNA:   3'- aGUGGCACGGUCuCGu-CA-GGUUgCGG- -5'
11500 3' -56.3 NC_003085.1 + 44379 0.66 0.593314
Target:  5'- gUCACUGUcGCUcGGGCuGUUCGucaucccGCGCCg -3'
miRNA:   3'- -AGUGGCA-CGGuCUCGuCAGGU-------UGCGG- -5'
11500 3' -56.3 NC_003085.1 + 14201 0.67 0.583462
Target:  5'- uUCAgaaGUGCCugcAGAGcCGGUCCGAaugcaGCCa -3'
miRNA:   3'- -AGUgg-CACGG---UCUC-GUCAGGUUg----CGG- -5'
11500 3' -56.3 NC_003085.1 + 34765 0.67 0.583462
Target:  5'- -gGCCuucgGCCuuGGCcuucGUCCAGCGCCa -3'
miRNA:   3'- agUGGca--CGGucUCGu---CAGGUUGCGG- -5'
11500 3' -56.3 NC_003085.1 + 35967 0.67 0.583462
Target:  5'- uUCGCCGcUGCCAcGucuccgaGGUCCAggucgagccGCGCCg -3'
miRNA:   3'- -AGUGGC-ACGGU-Cucg----UCAGGU---------UGCGG- -5'
11500 3' -56.3 NC_003085.1 + 22166 0.67 0.58237
Target:  5'- uUCACCGacGCCAGuccccugcgcgacAGCGGUCCAGguaucCGUa -3'
miRNA:   3'- -AGUGGCa-CGGUC-------------UCGUCAGGUU-----GCGg -5'
11500 3' -56.3 NC_003085.1 + 24115 0.67 0.576912
Target:  5'- gUCACCGU-CCGGaAGCGcgcgccauccaccuuGUCgGugGCCa -3'
miRNA:   3'- -AGUGGCAcGGUC-UCGU---------------CAGgUugCGG- -5'
11500 3' -56.3 NC_003085.1 + 18647 0.67 0.573643
Target:  5'- uUCGCCGUGCCcccgcgcaucugugcGAGCGcacUCCugcugaggguGACGCCg -3'
miRNA:   3'- -AGUGGCACGGu--------------CUCGUc--AGG----------UUGCGG- -5'
11500 3' -56.3 NC_003085.1 + 40292 0.67 0.572554
Target:  5'- gCGCCG-GCCuGGGCAGcgucgcccUCUAccuCGCCg -3'
miRNA:   3'- aGUGGCaCGGuCUCGUC--------AGGUu--GCGG- -5'
11500 3' -56.3 NC_003085.1 + 40733 0.67 0.572554
Target:  5'- cUCGCCGgcGCCggaggcacuGGAGguGUCCuuGgGCCu -3'
miRNA:   3'- -AGUGGCa-CGG---------UCUCguCAGGu-UgCGG- -5'
11500 3' -56.3 NC_003085.1 + 48817 0.67 0.572554
Target:  5'- -gGCgGUGCUcGAGCgccucgacgaGGUCC-GCGCCa -3'
miRNA:   3'- agUGgCACGGuCUCG----------UCAGGuUGCGG- -5'
11500 3' -56.3 NC_003085.1 + 42933 0.67 0.561695
Target:  5'- cCAguCCGUGCCAGuuuGGCGGacUCC-GCGUCu -3'
miRNA:   3'- aGU--GGCACGGUC---UCGUC--AGGuUGCGG- -5'
11500 3' -56.3 NC_003085.1 + 5795 0.67 0.560612
Target:  5'- aCGCCGUggccuucGUCGGAGCGGUgCGcaucggggagGCGUCa -3'
miRNA:   3'- aGUGGCA-------CGGUCUCGUCAgGU----------UGCGG- -5'
11500 3' -56.3 NC_003085.1 + 9078 0.67 0.550893
Target:  5'- -uGCCG-GCCAGcGCcagAGgcgUCAGCGCCg -3'
miRNA:   3'- agUGGCaCGGUCuCG---UCa--GGUUGCGG- -5'
11500 3' -56.3 NC_003085.1 + 37418 0.67 0.550893
Target:  5'- -gACCGaugcGCCAGuGCGGcuagCgAGCGCCa -3'
miRNA:   3'- agUGGCa---CGGUCuCGUCa---GgUUGCGG- -5'
11500 3' -56.3 NC_003085.1 + 39992 0.67 0.546589
Target:  5'- aUCGCUGgacgaauugcccgGCCucGAGCucGUCCAugaGCGCCg -3'
miRNA:   3'- -AGUGGCa------------CGGu-CUCGu-CAGGU---UGCGG- -5'
11500 3' -56.3 NC_003085.1 + 21401 0.68 0.529489
Target:  5'- cUCACCaucgGCCGccuGCuGUCCGAgGCCg -3'
miRNA:   3'- -AGUGGca--CGGUcu-CGuCAGGUUgCGG- -5'
11500 3' -56.3 NC_003085.1 + 26245 0.68 0.508397
Target:  5'- -gGCCGU-CUGGAGCAGcCCGGCcacuGCCu -3'
miRNA:   3'- agUGGCAcGGUCUCGUCaGGUUG----CGG- -5'
11500 3' -56.3 NC_003085.1 + 41424 0.68 0.497985
Target:  5'- gCugCGuUGUCgAGcGCAGUCCcguACGCCa -3'
miRNA:   3'- aGugGC-ACGG-UCuCGUCAGGu--UGCGG- -5'
11500 3' -56.3 NC_003085.1 + 12790 0.68 0.497985
Target:  5'- cCGCCGuUGUCGG-GCAGgugcUCC-ACGCCc -3'
miRNA:   3'- aGUGGC-ACGGUCuCGUC----AGGuUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.