miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11500 5' -62.1 NC_003085.1 + 45354 0.66 0.332776
Target:  5'- aGGugGCUGGcAGCCUggaccGCCCGGc- -3'
miRNA:   3'- aCCugCGACC-UCGGGgaa--CGGGUCca -5'
11500 5' -62.1 NC_003085.1 + 20731 0.67 0.278886
Target:  5'- -aGGCGCUGGAGUacgCCCUccaggaccggcugcUGCCCGGc- -3'
miRNA:   3'- acCUGCGACCUCG---GGGA--------------ACGGGUCca -5'
11500 5' -62.1 NC_003085.1 + 37124 0.67 0.267378
Target:  5'- aUGuGGCGCgu--G-CCCUUGCCCAGGUu -3'
miRNA:   3'- -AC-CUGCGaccuCgGGGAACGGGUCCA- -5'
11500 5' -62.1 NC_003085.1 + 15022 0.68 0.241817
Target:  5'- cUGGAcuugcCGCUGGgccGGCCCaagccgcaGCCCAGGg -3'
miRNA:   3'- -ACCU-----GCGACC---UCGGGgaa-----CGGGUCCa -5'
11500 5' -62.1 NC_003085.1 + 31680 0.68 0.241817
Target:  5'- cGGACucggGCgGGGGCCCUUggcuucGCUCAGGg -3'
miRNA:   3'- aCCUG----CGaCCUCGGGGAa-----CGGGUCCa -5'
11500 5' -62.1 NC_003085.1 + 12457 0.68 0.241817
Target:  5'- aGGucaGCGCUGGGGCgCCagcagUGCCCugcuGGa -3'
miRNA:   3'- aCC---UGCGACCUCGgGGa----ACGGGu---CCa -5'
11500 5' -62.1 NC_003085.1 + 45340 0.68 0.235754
Target:  5'- aGcGGCGCUGGAGUCCCagcgcggcGCCCAa-- -3'
miRNA:   3'- aC-CUGCGACCUCGGGGaa------CGGGUcca -5'
11500 5' -62.1 NC_003085.1 + 34477 0.7 0.172542
Target:  5'- gGGACGCugcccUGGGGCgCCU--CCCAGGg -3'
miRNA:   3'- aCCUGCG-----ACCUCGgGGAacGGGUCCa -5'
11500 5' -62.1 NC_003085.1 + 20222 0.7 0.159293
Target:  5'- cGGACGCcuuccGGuacgucGCCaCCUUcGCCCAGGUg -3'
miRNA:   3'- aCCUGCGa----CCu-----CGG-GGAA-CGGGUCCA- -5'
11500 5' -62.1 NC_003085.1 + 20929 0.71 0.155085
Target:  5'- aGGACGUccuaUGGAGCCCCgcgcgcgucUGCaCgAGGUg -3'
miRNA:   3'- aCCUGCG----ACCUCGGGGa--------ACG-GgUCCA- -5'
11500 5' -62.1 NC_003085.1 + 8286 1.07 0.00023
Target:  5'- cUGGACGCUGGAGCCCCUUGCCCAGGUa -3'
miRNA:   3'- -ACCUGCGACCUCGGGGAACGGGUCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.