miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11501 3' -54.2 NC_003085.1 + 6790 0.68 0.563298
Target:  5'- gACGAGUaCcgGGCCc--GCACGGCGg -3'
miRNA:   3'- -UGCUCAaGuaCCGGuucCGUGUCGUg -5'
11501 3' -54.2 NC_003085.1 + 25629 0.68 0.561061
Target:  5'- aGCGAGUg---GGCCGAGGCucucgcugacuuCGGUGCu -3'
miRNA:   3'- -UGCUCAaguaCCGGUUCCGu-----------GUCGUG- -5'
11501 3' -54.2 NC_003085.1 + 33201 0.69 0.530037
Target:  5'- aGCGGGcgUCcuggaGGCgGcGGCGCAGCACg -3'
miRNA:   3'- -UGCUCa-AGua---CCGgUuCCGUGUCGUG- -5'
11501 3' -54.2 NC_003085.1 + 34777 0.69 0.519105
Target:  5'- uCGGGUUC--GGC--AGGCGCAGUACg -3'
miRNA:   3'- uGCUCAAGuaCCGguUCCGUGUCGUG- -5'
11501 3' -54.2 NC_003085.1 + 23417 0.69 0.508265
Target:  5'- aGCGAG-UCAUGcagcgcuucGCCcagcAGGCGCAGCAg -3'
miRNA:   3'- -UGCUCaAGUAC---------CGGu---UCCGUGUCGUg -5'
11501 3' -54.2 NC_003085.1 + 40718 0.69 0.508265
Target:  5'- gACGAGccgCuUGGCCAcgaAGGCGCgcagguAGCACu -3'
miRNA:   3'- -UGCUCaa-GuACCGGU---UCCGUG------UCGUG- -5'
11501 3' -54.2 NC_003085.1 + 34704 0.69 0.49752
Target:  5'- gGCGccGGUUgCAUGGCCAcggcGGCGCguGGCAUa -3'
miRNA:   3'- -UGC--UCAA-GUACCGGUu---CCGUG--UCGUG- -5'
11501 3' -54.2 NC_003085.1 + 40500 0.7 0.476347
Target:  5'- cGCGAGgcCGcGGCCcuuGGCcCAGCGCa -3'
miRNA:   3'- -UGCUCaaGUaCCGGuu-CCGuGUCGUG- -5'
11501 3' -54.2 NC_003085.1 + 41803 0.71 0.425497
Target:  5'- cACGGaUUCGUGGCCcAGGacuCGGCGCc -3'
miRNA:   3'- -UGCUcAAGUACCGGuUCCgu-GUCGUG- -5'
11501 3' -54.2 NC_003085.1 + 34095 0.71 0.425497
Target:  5'- gGCGGGUUCgGUGGCguCAGGGcCACcGCAUg -3'
miRNA:   3'- -UGCUCAAG-UACCG--GUUCC-GUGuCGUG- -5'
11501 3' -54.2 NC_003085.1 + 22188 0.71 0.406079
Target:  5'- gGCGaAGgugCA-GGCCGAGGUGCAGgGCg -3'
miRNA:   3'- -UGC-UCaa-GUaCCGGUUCCGUGUCgUG- -5'
11501 3' -54.2 NC_003085.1 + 19680 0.72 0.351295
Target:  5'- gACGAGaagCAUGccGCCAGGGC-CAGUGCg -3'
miRNA:   3'- -UGCUCaa-GUAC--CGGUUCCGuGUCGUG- -5'
11501 3' -54.2 NC_003085.1 + 13548 0.72 0.334238
Target:  5'- gACGGGUUCAgcaCCGAGGCGagcaaGGCGCg -3'
miRNA:   3'- -UGCUCAAGUaccGGUUCCGUg----UCGUG- -5'
11501 3' -54.2 NC_003085.1 + 17194 0.73 0.286754
Target:  5'- gACGAGUcCcgGGCCAccgAGGcCugGGCGCu -3'
miRNA:   3'- -UGCUCAaGuaCCGGU---UCC-GugUCGUG- -5'
11501 3' -54.2 NC_003085.1 + 627 0.74 0.272151
Target:  5'- gGCGGGUUgugcUGcGCCAAGGCGCucGGCGCg -3'
miRNA:   3'- -UGCUCAAgu--AC-CGGUUCCGUG--UCGUG- -5'
11501 3' -54.2 NC_003085.1 + 5318 0.74 0.272151
Target:  5'- cGCGAGcgCGUGGCCAcgcuggAGGCGaaguCAGCAa -3'
miRNA:   3'- -UGCUCaaGUACCGGU------UCCGU----GUCGUg -5'
11501 3' -54.2 NC_003085.1 + 10554 0.74 0.262984
Target:  5'- cGCGAGUggCA-GGCgCAagaggcgaaggagcGGGCGCAGCACg -3'
miRNA:   3'- -UGCUCAa-GUaCCG-GU--------------UCCGUGUCGUG- -5'
11501 3' -54.2 NC_003085.1 + 11896 0.81 0.090721
Target:  5'- cCGAGUUCAUGGCC-AGGCGCucCACg -3'
miRNA:   3'- uGCUCAAGUACCGGuUCCGUGucGUG- -5'
11501 3' -54.2 NC_003085.1 + 7798 1.09 0.000948
Target:  5'- gACGAGUUCAUGGCCAAGGCACAGCACc -3'
miRNA:   3'- -UGCUCAAGUACCGGUUCCGUGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.