miRNA display CGI


Results 1 - 17 of 17 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11501 5' -59.8 NC_003085.1 + 21878 0.66 0.449569
Target:  5'- aGGUGGCCGaacuGGCC-GGGuCCGUGc--- -3'
miRNA:   3'- gCCGCCGGU----UCGGaCCC-GGUACaagc -5'
11501 5' -59.8 NC_003085.1 + 4108 0.66 0.445716
Target:  5'- gGGCGGuCCAGGCUgccagccaccuggGGGCCGaccUCGu -3'
miRNA:   3'- gCCGCC-GGUUCGGa------------CCCGGUacaAGC- -5'
11501 5' -59.8 NC_003085.1 + 26120 0.66 0.439971
Target:  5'- uCGGCGGCCGGcggcGCUUGgccGGCCAgag-CGg -3'
miRNA:   3'- -GCCGCCGGUU----CGGAC---CCGGUacaaGC- -5'
11501 5' -59.8 NC_003085.1 + 36957 0.66 0.430492
Target:  5'- ---aGGCaGGGCCgcgGGGCCAUGUUgGc -3'
miRNA:   3'- gccgCCGgUUCGGa--CCCGGUACAAgC- -5'
11501 5' -59.8 NC_003085.1 + 8945 0.66 0.411898
Target:  5'- gCGcGUGGCCAAccuGCgCUGGGCCAaGggccgCGg -3'
miRNA:   3'- -GC-CGCCGGUU---CG-GACCCGGUaCaa---GC- -5'
11501 5' -59.8 NC_003085.1 + 48798 0.67 0.376244
Target:  5'- aGGUGGCCGGcgacGUCcGGGCgGUGcUCGa -3'
miRNA:   3'- gCCGCCGGUU----CGGaCCCGgUACaAGC- -5'
11501 5' -59.8 NC_003085.1 + 43133 0.67 0.360053
Target:  5'- uCGGCaGGCCAugguuuccuccuccuGCUUGGGCa--GUUCGa -3'
miRNA:   3'- -GCCG-CCGGUu--------------CGGACCCGguaCAAGC- -5'
11501 5' -59.8 NC_003085.1 + 41357 0.68 0.349259
Target:  5'- aCGGCaGGCCGGGCCgcgucacccacgucaUGacgguggugggugacGGCCGUGUugUCGg -3'
miRNA:   3'- -GCCG-CCGGUUCGG---------------AC---------------CCGGUACA--AGC- -5'
11501 5' -59.8 NC_003085.1 + 42715 0.68 0.326801
Target:  5'- gCGGCGGCaccuCAGGCgUGGGCgUcgGggCGa -3'
miRNA:   3'- -GCCGCCG----GUUCGgACCCG-GuaCaaGC- -5'
11501 5' -59.8 NC_003085.1 + 21557 0.69 0.303947
Target:  5'- aCGcGCGGCCc-GCgaGGGCCAUGa--- -3'
miRNA:   3'- -GC-CGCCGGuuCGgaCCCGGUACaagc -5'
11501 5' -59.8 NC_003085.1 + 35721 0.7 0.261971
Target:  5'- uGGCGGCCAcGGCgaGGGCaggGUGgcCGa -3'
miRNA:   3'- gCCGCCGGU-UCGgaCCCGg--UACaaGC- -5'
11501 5' -59.8 NC_003085.1 + 40842 0.7 0.261971
Target:  5'- aCGGCGGCCGGGCU--GGCCAa----- -3'
miRNA:   3'- -GCCGCCGGUUCGGacCCGGUacaagc -5'
11501 5' -59.8 NC_003085.1 + 19726 0.7 0.261971
Target:  5'- aCGGCGGCCAcGuCCUGGGCgAc----- -3'
miRNA:   3'- -GCCGCCGGUuC-GGACCCGgUacaagc -5'
11501 5' -59.8 NC_003085.1 + 42773 0.71 0.224834
Target:  5'- gGGCGGCCGcaAGCCgcuccaGGGCCAUc---- -3'
miRNA:   3'- gCCGCCGGU--UCGGa-----CCCGGUAcaagc -5'
11501 5' -59.8 NC_003085.1 + 7654 0.71 0.197388
Target:  5'- aCGGC-GCCGAGuCCUGGGCCAc----- -3'
miRNA:   3'- -GCCGcCGGUUC-GGACCCGGUacaagc -5'
11501 5' -59.8 NC_003085.1 + 24373 0.73 0.14595
Target:  5'- uGGCGGCCGGGCCaUcaauggccuggacgGGGCCGUGc-CGg -3'
miRNA:   3'- gCCGCCGGUUCGG-A--------------CCCGGUACaaGC- -5'
11501 5' -59.8 NC_003085.1 + 7832 1.09 0.000314
Target:  5'- gCGGCGGCCAAGCCUGGGCCAUGUUCGa -3'
miRNA:   3'- -GCCGCCGGUUCGGACCCGGUACAAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.