miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11502 5' -60.7 NC_003085.1 + 37153 0.66 0.363063
Target:  5'- cGGGCacccUGGCgGUGACGGGGacGAGcUCCu- -3'
miRNA:   3'- -UCCG----ACCGaCGCUGCCCU--CUC-AGGua -5'
11502 5' -60.7 NC_003085.1 + 27022 0.66 0.354643
Target:  5'- cGGGCUGGCgcuccuCGACGGacuGGuAGUCCGg -3'
miRNA:   3'- -UCCGACCGac----GCUGCCc--UC-UCAGGUa -5'
11502 5' -60.7 NC_003085.1 + 1322 0.66 0.354643
Target:  5'- aAGGCUGGCacUGCGAUGGcGcuGGAGUaCGg -3'
miRNA:   3'- -UCCGACCG--ACGCUGCC-C--UCUCAgGUa -5'
11502 5' -60.7 NC_003085.1 + 10361 0.66 0.346363
Target:  5'- cGGCcaGGaCUGCGGCGGGAGcGUUg-- -3'
miRNA:   3'- uCCGa-CC-GACGCUGCCCUCuCAGgua -5'
11502 5' -60.7 NC_003085.1 + 8821 0.67 0.32236
Target:  5'- gAGGCugccgagacaUGGCUGCGcgaGCaGGAGGGgcggCCAUg -3'
miRNA:   3'- -UCCG----------ACCGACGC---UGcCCUCUCa---GGUA- -5'
11502 5' -60.7 NC_003085.1 + 19027 0.67 0.32236
Target:  5'- cGGCaaguccucUGGCUGCGuCGuGGAGAuUCCGc -3'
miRNA:   3'- uCCG--------ACCGACGCuGC-CCUCUcAGGUa -5'
11502 5' -60.7 NC_003085.1 + 42781 0.69 0.232823
Target:  5'- cGGCuUGaGCcucgGUGACGGGAGGGUCgAa -3'
miRNA:   3'- uCCG-AC-CGa---CGCUGCCCUCUCAGgUa -5'
11502 5' -60.7 NC_003085.1 + 14374 0.7 0.209822
Target:  5'- cGGCUGGCUGCG-CGGauGAGGGgcagacCCGc -3'
miRNA:   3'- uCCGACCGACGCuGCC--CUCUCa-----GGUa -5'
11502 5' -60.7 NC_003085.1 + 47979 0.71 0.18385
Target:  5'- gAGGCUGGCgacgGUGACGGGcggcgacuuGGGGUgUCAUg -3'
miRNA:   3'- -UCCGACCGa---CGCUGCCC---------UCUCA-GGUA- -5'
11502 5' -60.7 NC_003085.1 + 7290 1.06 0.000365
Target:  5'- gAGGCUGGCUGCGACGGGAGAGUCCAUg -3'
miRNA:   3'- -UCCGACCGACGCUGCCCUCUCAGGUA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.