miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11503 3' -56.2 NC_003085.1 + 38064 0.66 0.625876
Target:  5'- -uGUGGUgGuGCGUCGCGGA-GAcgGCa -3'
miRNA:   3'- uuCACCGgU-CGCAGUGCCUaCUa-CGc -5'
11503 3' -56.2 NC_003085.1 + 7615 0.66 0.625876
Target:  5'- gAGGUGGaCCAGCGcCggGCGGGacucaUGggGCGc -3'
miRNA:   3'- -UUCACC-GGUCGCaG--UGCCU-----ACuaCGC- -5'
11503 3' -56.2 NC_003085.1 + 15197 0.66 0.603575
Target:  5'- cGGUGcGCCAGCGccgcgcCGCGGAagUGG-GCGa -3'
miRNA:   3'- uUCAC-CGGUCGCa-----GUGCCU--ACUaCGC- -5'
11503 3' -56.2 NC_003085.1 + 20547 0.66 0.570335
Target:  5'- cGGuUGGCCuGCGUCugcUGGuUGAUGCu -3'
miRNA:   3'- uUC-ACCGGuCGCAGu--GCCuACUACGc -5'
11503 3' -56.2 NC_003085.1 + 37453 0.67 0.559348
Target:  5'- cAGGUGcGCCAGCGUCA-GGccGcUGCu -3'
miRNA:   3'- -UUCAC-CGGUCGCAGUgCCuaCuACGc -5'
11503 3' -56.2 NC_003085.1 + 14364 0.67 0.53756
Target:  5'- cAGaaGCCAGCGgcuggcugCGCGGAUGAgggGCa -3'
miRNA:   3'- uUCacCGGUCGCa-------GUGCCUACUa--CGc -5'
11503 3' -56.2 NC_003085.1 + 2672 0.67 0.526775
Target:  5'- -cGUGGCCAccgucauCGUCGCGGAg---GCGg -3'
miRNA:   3'- uuCACCGGUc------GCAGUGCCUacuaCGC- -5'
11503 3' -56.2 NC_003085.1 + 17210 0.67 0.526775
Target:  5'- aGAGuUGGUCAGCGcCGCuGGUGAgcacGCGg -3'
miRNA:   3'- -UUC-ACCGGUCGCaGUGcCUACUa---CGC- -5'
11503 3' -56.2 NC_003085.1 + 24174 0.67 0.516073
Target:  5'- --cUGGCCGGcCGUCGCGG-UGAgguagacggGCGc -3'
miRNA:   3'- uucACCGGUC-GCAGUGCCuACUa--------CGC- -5'
11503 3' -56.2 NC_003085.1 + 35037 0.67 0.501239
Target:  5'- aGAG-GGCCAGCccUCGCGGAgcaucuccaaggcGAUGCGc -3'
miRNA:   3'- -UUCaCCGGUCGc-AGUGCCUa------------CUACGC- -5'
11503 3' -56.2 NC_003085.1 + 25020 0.68 0.494939
Target:  5'- gAAG-GGCCacAGCG-CGCGGuUGAUGCc -3'
miRNA:   3'- -UUCaCCGG--UCGCaGUGCCuACUACGc -5'
11503 3' -56.2 NC_003085.1 + 42553 0.68 0.483485
Target:  5'- ---cGGCCAGCG-CGCGGGcgagggcUGAcGCGa -3'
miRNA:   3'- uucaCCGGUCGCaGUGCCU-------ACUaCGC- -5'
11503 3' -56.2 NC_003085.1 + 19697 0.69 0.443956
Target:  5'- cAG-GGCCAGUGcgCACGaGGUGggGCGc -3'
miRNA:   3'- uUCaCCGGUCGCa-GUGC-CUACuaCGC- -5'
11503 3' -56.2 NC_003085.1 + 9687 0.69 0.405371
Target:  5'- ---aGGUacucaAGCGUCA-GGGUGAUGCGg -3'
miRNA:   3'- uucaCCGg----UCGCAGUgCCUACUACGC- -5'
11503 3' -56.2 NC_003085.1 + 36915 0.7 0.368966
Target:  5'- ---cGGCCAGCGgCGCGGGUGGcaucccucUGCc -3'
miRNA:   3'- uucaCCGGUCGCaGUGCCUACU--------ACGc -5'
11503 3' -56.2 NC_003085.1 + 48797 0.74 0.216057
Target:  5'- cAGGUGGCCGGCGacgUC-CGGgcGGUGCu -3'
miRNA:   3'- -UUCACCGGUCGC---AGuGCCuaCUACGc -5'
11503 3' -56.2 NC_003085.1 + 44151 0.74 0.210332
Target:  5'- -cGUGGCCAcGCGcUCGCGGAggGAgGCGa -3'
miRNA:   3'- uuCACCGGU-CGC-AGUGCCUa-CUaCGC- -5'
11503 3' -56.2 NC_003085.1 + 30007 0.75 0.164482
Target:  5'- cAGUGGCCGGUGUgcCACGGGuUGGUGUc -3'
miRNA:   3'- uUCACCGGUCGCA--GUGCCU-ACUACGc -5'
11503 3' -56.2 NC_003085.1 + 6490 1.07 0.000786
Target:  5'- gAAGUGGCCAGCGUCACGGAUGAUGCGg -3'
miRNA:   3'- -UUCACCGGUCGCAGUGCCUACUACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.