miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11503 5' -57.7 NC_003085.1 + 18794 0.66 0.562465
Target:  5'- cGGCugucGCugAGCGACGagaCGUGGCgAa-- -3'
miRNA:   3'- -CCG----CGugUCGUUGCg--GCACCGgUagu -5'
11503 5' -57.7 NC_003085.1 + 28354 0.66 0.562465
Target:  5'- cGCcaucCGCGGCAcCGCCGUGGCgCGg-- -3'
miRNA:   3'- cCGc---GUGUCGUuGCGGCACCG-GUagu -5'
11503 5' -57.7 NC_003085.1 + 32997 0.66 0.562465
Target:  5'- cGGCGCGCAGgucggaCAcUGCCGUcGCC-UCGa -3'
miRNA:   3'- -CCGCGUGUC------GUuGCGGCAcCGGuAGU- -5'
11503 5' -57.7 NC_003085.1 + 17674 0.66 0.562465
Target:  5'- uGGCGCugAGacCGACGaCGcGGCCAggCAg -3'
miRNA:   3'- -CCGCGugUC--GUUGCgGCaCCGGUa-GU- -5'
11503 5' -57.7 NC_003085.1 + 32439 0.66 0.55923
Target:  5'- uGGCGUcauacGCgAGCAGCGCCcauccgcgcuucucGUcGCCGUCGg -3'
miRNA:   3'- -CCGCG-----UG-UCGUUGCGG--------------CAcCGGUAGU- -5'
11503 5' -57.7 NC_003085.1 + 23636 0.66 0.551704
Target:  5'- aGGUGCuuCAGCAGCGCgagcaGGCCGcgCAg -3'
miRNA:   3'- -CCGCGu-GUCGUUGCGgca--CCGGUa-GU- -5'
11503 5' -57.7 NC_003085.1 + 18355 0.66 0.551704
Target:  5'- cGGgGCGguGCAG-GCCGUGGa-GUCGc -3'
miRNA:   3'- -CCgCGUguCGUUgCGGCACCggUAGU- -5'
11503 5' -57.7 NC_003085.1 + 25030 0.66 0.551704
Target:  5'- aGCGCGCGGUugaugcCGCCGUaGGugcccaCCGUCGg -3'
miRNA:   3'- cCGCGUGUCGuu----GCGGCA-CC------GGUAGU- -5'
11503 5' -57.7 NC_003085.1 + 14788 0.66 0.547417
Target:  5'- cGGCGCGgGGUgcaaAAgGCCGacauccuccgcgaGGCCAUCGc -3'
miRNA:   3'- -CCGCGUgUCG----UUgCGGCa------------CCGGUAGU- -5'
11503 5' -57.7 NC_003085.1 + 180 0.66 0.541006
Target:  5'- cGCGaCGCAGCAGC-CacaggggGUGGCCAUg- -3'
miRNA:   3'- cCGC-GUGUCGUUGcGg------CACCGGUAgu -5'
11503 5' -57.7 NC_003085.1 + 8666 0.66 0.541006
Target:  5'- cGCGCGUGGCcuugGGCGCCGggGuGCCGUCc -3'
miRNA:   3'- cCGCGUGUCG----UUGCGGCa-C-CGGUAGu -5'
11503 5' -57.7 NC_003085.1 + 46869 0.66 0.541006
Target:  5'- cGCGCGCAGCGucuuccgugaccGCGUCGaUGGCg---- -3'
miRNA:   3'- cCGCGUGUCGU------------UGCGGC-ACCGguagu -5'
11503 5' -57.7 NC_003085.1 + 34934 0.66 0.541006
Target:  5'- aGGCGCACgcGGCGGaGuuGcUGGCCggCGg -3'
miRNA:   3'- -CCGCGUG--UCGUUgCggC-ACCGGuaGU- -5'
11503 5' -57.7 NC_003085.1 + 3865 0.66 0.541006
Target:  5'- cGGCGCgucgACGGC-GCGCCc--GCCGUCu -3'
miRNA:   3'- -CCGCG----UGUCGuUGCGGcacCGGUAGu -5'
11503 5' -57.7 NC_003085.1 + 43206 0.66 0.541006
Target:  5'- cGGCGUcCucguGCAGCGCgCGUacuucgGaGCCAUCAa -3'
miRNA:   3'- -CCGCGuGu---CGUUGCG-GCA------C-CGGUAGU- -5'
11503 5' -57.7 NC_003085.1 + 39512 0.66 0.541006
Target:  5'- cGGUGCGCcucgucgcuGGCAuCGUCcUGGCCGUUc -3'
miRNA:   3'- -CCGCGUG---------UCGUuGCGGcACCGGUAGu -5'
11503 5' -57.7 NC_003085.1 + 47916 0.66 0.534621
Target:  5'- cGCGCACGGCcucgcgacagcaGACGCUGgagucacgccuggcGGCCGUgAg -3'
miRNA:   3'- cCGCGUGUCG------------UUGCGGCa-------------CCGGUAgU- -5'
11503 5' -57.7 NC_003085.1 + 24208 0.66 0.530379
Target:  5'- cGCGCugAaGCAguACGCgGUGcCCGUCGu -3'
miRNA:   3'- cCGCGugU-CGU--UGCGgCACcGGUAGU- -5'
11503 5' -57.7 NC_003085.1 + 44787 0.66 0.530379
Target:  5'- aGGCGCAacuCGGCGCCGUgaaaGGCUcgCc -3'
miRNA:   3'- -CCGCGUgucGUUGCGGCA----CCGGuaGu -5'
11503 5' -57.7 NC_003085.1 + 48689 0.66 0.519829
Target:  5'- gGGCGCACcGUuGCGCggCGUGGCgGacUCGc -3'
miRNA:   3'- -CCGCGUGuCGuUGCG--GCACCGgU--AGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.