miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11504 3' -50.9 NC_003085.1 + 28457 0.67 0.859113
Target:  5'- cCAGGgcGugGauuGAgGCGCUCAccggcugcgugcUGACGCg -3'
miRNA:   3'- -GUUCuaCugC---CUgUGCGAGU------------ACUGCG- -5'
11504 3' -50.9 NC_003085.1 + 18146 0.67 0.856538
Target:  5'- aCAAGGUGACGGACccgaggcggaagaaGCGC-CAgucgGGCu- -3'
miRNA:   3'- -GUUCUACUGCCUG--------------UGCGaGUa---CUGcg -5'
11504 3' -50.9 NC_003085.1 + 12829 0.67 0.850443
Target:  5'- -----gGGCGGAUGCGCUguUGGcCGCc -3'
miRNA:   3'- guucuaCUGCCUGUGCGAguACU-GCG- -5'
11504 3' -50.9 NC_003085.1 + 41746 0.67 0.841528
Target:  5'- gGGGAacGAgGGACAUgGCuUCAUGACGUc -3'
miRNA:   3'- gUUCUa-CUgCCUGUG-CG-AGUACUGCG- -5'
11504 3' -50.9 NC_003085.1 + 42110 0.68 0.832377
Target:  5'- uCGAGGUGGCGGAgGacggcaaGCgaaugCAcGGCGCg -3'
miRNA:   3'- -GUUCUACUGCCUgUg------CGa----GUaCUGCG- -5'
11504 3' -50.9 NC_003085.1 + 19527 0.68 0.832377
Target:  5'- uCGAGcagcccaGCGGACGCGCgCccGACGCg -3'
miRNA:   3'- -GUUCuac----UGCCUGUGCGaGuaCUGCG- -5'
11504 3' -50.9 NC_003085.1 + 2141 0.68 0.813411
Target:  5'- gAGGAcGGCGGccccCGC-CUCAUGACGUc -3'
miRNA:   3'- gUUCUaCUGCCu---GUGcGAGUACUGCG- -5'
11504 3' -50.9 NC_003085.1 + 8535 0.68 0.813411
Target:  5'- --cGAaGGCGGugACGC-CAUGACu- -3'
miRNA:   3'- guuCUaCUGCCugUGCGaGUACUGcg -5'
11504 3' -50.9 NC_003085.1 + 28115 0.68 0.812441
Target:  5'- --cGcgGAUGG-CGCGCUCcagcaggGUGAUGCg -3'
miRNA:   3'- guuCuaCUGCCuGUGCGAG-------UACUGCG- -5'
11504 3' -50.9 NC_003085.1 + 33422 0.68 0.793631
Target:  5'- cCGAGGUGAUGGGCAgGCagGUcACGg -3'
miRNA:   3'- -GUUCUACUGCCUGUgCGagUAcUGCg -5'
11504 3' -50.9 NC_003085.1 + 11779 0.68 0.793631
Target:  5'- -----cGGCGGcgcCGCGCUCcgGGCGUg -3'
miRNA:   3'- guucuaCUGCCu--GUGCGAGuaCUGCG- -5'
11504 3' -50.9 NC_003085.1 + 5473 0.68 0.793631
Target:  5'- gCGGGAguuggaGGCGGACaACGCggCGUGGgGCc -3'
miRNA:   3'- -GUUCUa-----CUGCCUG-UGCGa-GUACUgCG- -5'
11504 3' -50.9 NC_003085.1 + 11191 0.68 0.792623
Target:  5'- gCGAGAccuGCGGaaggaagGCACGC-CAUGACGUg -3'
miRNA:   3'- -GUUCUac-UGCC-------UGUGCGaGUACUGCG- -5'
11504 3' -50.9 NC_003085.1 + 15113 0.69 0.783465
Target:  5'- aCGAGcgGAUGGAgcgcCGCGCcgCGUGGUGCg -3'
miRNA:   3'- -GUUCuaCUGCCU----GUGCGa-GUACUGCG- -5'
11504 3' -50.9 NC_003085.1 + 34755 0.69 0.783465
Target:  5'- gGAGGUGACGGGuguucccacuuCGgGUUCGgcaGGCGCa -3'
miRNA:   3'- gUUCUACUGCCU-----------GUgCGAGUa--CUGCG- -5'
11504 3' -50.9 NC_003085.1 + 14672 0.69 0.77313
Target:  5'- gCAAGGacuUGGAgGCGC-CGUGGCGCu -3'
miRNA:   3'- -GUUCUacuGCCUgUGCGaGUACUGCG- -5'
11504 3' -50.9 NC_003085.1 + 41489 0.69 0.76264
Target:  5'- -cAGAUGGCGGACcUGCUgcccUGUGGgGCa -3'
miRNA:   3'- guUCUACUGCCUGuGCGA----GUACUgCG- -5'
11504 3' -50.9 NC_003085.1 + 13582 0.69 0.76264
Target:  5'- -uGGAcGugGGcaccggagGCGCGC-CAUGACGCc -3'
miRNA:   3'- guUCUaCugCC--------UGUGCGaGUACUGCG- -5'
11504 3' -50.9 NC_003085.1 + 40574 0.69 0.752007
Target:  5'- --uGGUGGCGGugcGCAUGC-CA-GACGCg -3'
miRNA:   3'- guuCUACUGCC---UGUGCGaGUaCUGCG- -5'
11504 3' -50.9 NC_003085.1 + 47374 0.69 0.752007
Target:  5'- cCGAGGUGcgGCGGcUGCGCUCGUcGCGUc -3'
miRNA:   3'- -GUUCUAC--UGCCuGUGCGAGUAcUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.